View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_high_8 (Length: 449)

Name: NF11126_high_8
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_high_8
NF11126_high_8
[»] chr3 (2 HSPs)
chr3 (248-447)||(24265550-24265749)
chr3 (7-190)||(24265309-24265492)
[»] chr7 (4 HSPs)
chr7 (275-362)||(31113377-31113464)
chr7 (275-358)||(31197136-31197219)
chr7 (276-358)||(31054591-31054673)
chr7 (275-358)||(31066135-31066218)
[»] chr4 (5 HSPs)
chr4 (52-100)||(42745408-42745456)
chr4 (52-100)||(42754768-42754816)
chr4 (263-345)||(42764353-42764435)
chr4 (266-359)||(42732955-42733048)
chr4 (52-88)||(42720193-42720229)
[»] chr5 (1 HSPs)
chr5 (257-361)||(37020080-37020184)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 248 - 447
Target Start/End: Original strand, 24265550 - 24265749
Alignment:
Q  248 caccttcaaagccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaa 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265550 caccttcaaagccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaa 24265649  T
Q  348 aaattgcaagtaagtgaataatctcccaaatattcttatgcatgagatatgatgttaattattttttatgggtgcagaacatccaaatgtagtgtctgtg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265650 aaattgcaagtaagtgaataatctcccaaatattcttatgcatgagatatgatgttaattattttttatgggtgcagaacatccaaatgtagtgtctgtg 24265749  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 24265309 - 24265492
Alignment:
Q  7 tgtatttcaaaattatatggtttgtaaaattaaattatttgttgcagtcttatattgtgtacttaggatcacattctcatgggccaaacccttctgcaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  24265309 tgtatttcaaaattatatggtttgtaaaattaaattatttgttgcagtcttatattgtgtacataggatcacattctcatgggccaaacccttcagcaag 24265408  T
Q  107 tgatctccaatctgcaacaaatttccattacaatttactaggctcacacttgggaaggtatattctatagaatatttcaataaa 190  Q
    ||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24265409 tgatctccaatctgctacagactcccattacaatttactaggctcacacttgggaaggtatattctatagaatatttcaataaa 24265492  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 31113464 - 31113377
Alignment:
Q  275 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagtaagt 362  Q
    ||||||||| |||| ||||| |||||||| || ||||| ||||| ||| | |||||||  |||||||| ||| |||||||||||||||    
T  31113464 gaagcaataatttattcatataataaacagattaatggctttgcagctatgcttgaagaggaagaagctgcacaaattgcaagtaagt 31113377  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 31197136 - 31197219
Alignment:
Q  275 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 358  Q
    ||||||||  |||| ||||| || |||||||||||||| ||||||||| |||||||||  |||||||| ||| | |||||||||    
T  31197136 gaagcaatcatttattcatataacaaacacatcaatggctttgctgctctacttgaagatgaagaagctgcagatattgcaagt 31197219  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 31054673 - 31054591
Alignment:
Q  276 aagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 358  Q
    |||||||| |||| ||||| |||||||| |||||||| ||||| ||| |||||||||  ||||| || ||| |||||||||||    
T  31054673 aagcaataatttattcatataataaacagatcaatggctttgcagctatacttgaagaggaagaggctgcacaaattgcaagt 31054591  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 31066218 - 31066135
Alignment:
Q  275 gaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagt 358  Q
    ||||||||| |||| || ||||||||||| |||||||| ||||| ||| | |||||||  |||||||| ||| || ||||||||    
T  31066218 gaagcaataatttattcttacaataaacagatcaatggctttgcagctatgcttgaagaggaagaagctgcacaacttgcaagt 31066135  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42745456 - 42745408
Alignment:
Q  52 agtcttatattgtgtacttaggatcacattctcatgggccaaacccttc 100  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| |||||    
T  42745456 agtcctatattgtatacttaggatcacattctcatggtccaaatccttc 42745408  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42754816 - 42754768
Alignment:
Q  52 agtcttatattgtgtacttaggatcacattctcatgggccaaacccttc 100  Q
    |||| |||||||| ||||||||||||||||||||||| ||||| |||||    
T  42754816 agtcctatattgtatacttaggatcacattctcatggtccaaatccttc 42754768  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 42764435 - 42764353
Alignment:
Q  263 gagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagc 345  Q
    |||||||| || ||||||||||||||||| || |||| | | || ||||| ||||||||  ||||||| | ||||||||||||    
T  42764435 gagaaggccaaagaagcaatattttactcttataatagatatattaatggatttgctgcaatacttgatgaagaagaagcagc 42764353  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 42732955 - 42733048
Alignment:
Q  266 aaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaagta 359  Q
    ||||| || ||||||||||||||||| || |||| | | || ||||| ||||||||  ||||||| | ||| |||||||||||  |||||||||    
T  42732955 aaggccaaagaagcaatattttactcttataatagatatattaatggatttgctgcaatacttgatgaagatgaagcagcaaagcttgcaagta 42733048  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 42720229 - 42720193
Alignment:
Q  52 agtcttatattgtgtacttaggatcacattctcatgg 88  Q
    |||| |||||||| |||||||||||||||||||||||    
T  42720229 agtcctatattgtatacttaggatcacattctcatgg 42720193  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 37020184 - 37020080
Alignment:
Q  257 agccatgagaaggctaaggaagcaatattttactcatacaataaacacatcaatggttttgctgctgtacttgaagtagaagaagcagcaaaaattgcaa 356  Q
    |||||||||||||| |||||| || |  | ||||| |||||||| || || ||||| ||||||||  | |||||||  ||||| ||| |||| |||||||    
T  37020184 agccatgagaaggcaaaggaaacagtgatgtactcttacaataagcatataaatggatttgctgcactgcttgaagatgaagaggcatcaaagattgcaa 37020085  T
Q  357 gtaag 361  Q
    |||||    
T  37020084 gtaag 37020080  T

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