View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_low_1 (Length: 925)
Name: NF11126_low_1
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 668 - 920
Target Start/End: Complemental strand, 27572506 - 27572252
Alignment:
| Q |
668 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
767 |
Q |
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| T |
27572506 |
ttacgaaatgttgattttgtgattcacactccttgtatataagtagaaaataatacaccaattgccatatgtaaaatgaattgattctttttcaaatgca |
27572407 |
T |
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| Q |
768 |
tatattgcattatttcttatagaataatgttaatgattctcgtaaatgttgcttctattaaacccatttgtgttagcatggtgttattgacttggaaatt |
867 |
Q |
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| T |
27572406 |
tatattgcattattgcttatagaataatgttaatgattctcgtaaatgttgcttctattaaactcatttgtgttagcatggtggtattgacttggaagtt |
27572307 |
T |
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| Q |
868 |
gggagtgtgttcatcctcaatcctcaagg--tcaggttcgattatctctgctgct |
920 |
Q |
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| T |
27572306 |
gggagtgtgttcatcctaaatcctcaaggtctcaggttcgattttctctggtgct |
27572252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 27574116 - 27573943
Alignment:
| Q |
20 |
agtgacagttcgagacattgagtagtaccaccaagaagccatgaatgatgagaagagttgatgaaccagcttctcaaataatctttccgaaacttagact |
119 |
Q |
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| T |
27574116 |
agtgacagttcgagacattgagtagtaccaccaagaagccatgaatgatcagaagagttgatgaaccagcttctcaaataatctttccgaaacttagact |
27574017 |
T |
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| Q |
120 |
gaacaagcaacattctgcctcctcccaaatttaaccactcaaagtgacttgaacacaataaccttaacctccta |
193 |
Q |
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| T |
27574016 |
gaacaagcaacattctgcctcctcccaaatttaaccactcaaagtgacttgaacacaataaccttaacctccta |
27573943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 387 - 511
Target Start/End: Complemental strand, 27572630 - 27572504
Alignment:
| Q |
387 |
caaaaatttgtcactgataaatataataaataaataatgagttccactatgta--gttaatatcaactggatatgaatttggttgaaaaactttttccac |
484 |
Q |
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| T |
27572630 |
caaaaatttgtcactgataaatataataaataaataatgagttccactatgtatagttaatatcaactggatatgaatttggttgaaaaactttttccac |
27572531 |
T |
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| Q |
485 |
gttaaaataacaaaaatatatacatta |
511 |
Q |
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| T |
27572530 |
gttaaaataacaaaaatatatacatta |
27572504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 264 - 391
Target Start/End: Complemental strand, 27573698 - 27573571
Alignment:
| Q |
264 |
gcaccaaactataaaatatataagtgaacgccaaagtctcaagaaataaaacaaattttcttgtatgccattttcccttacggttgattaaacattctta |
363 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27573698 |
gcacaaaactataaaatatataagtgaacgccaaagtctcaagaactaaaacaaattttcttgtatgccattttcccttacggttgattatacattctta |
27573599 |
T |
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| Q |
364 |
aaatgcaaatcacacttgcaaaccaaaa |
391 |
Q |
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| T |
27573598 |
aaatgcaaatcacacttgcaacccaaaa |
27573571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 27573851 - 27573776
Alignment:
| Q |
193 |
attagattttgtccttagccaaagcatagatcaaattaaagtttaacatggttaaagccaaaaaactcatggcacc |
268 |
Q |
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| T |
27573851 |
attagattttgtccttagccaaagcatagatcaaattaaagtttaacatggttaaagccaaaaaactcatggcacc |
27573776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 518
Target Start/End: Original strand, 22396955 - 22397016
Alignment:
| Q |
457 |
atgaatttggttgaaaaactttttccacgttaaaataacaaaaatatatacattataaatat |
518 |
Q |
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|||| ||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| |
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| T |
22396955 |
atgatttttgttgaaaaactctttccgtattaaaataacaaaaatatatattttataaatat |
22397016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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