View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_low_11 (Length: 329)
Name: NF11126_low_11
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 42007939 - 42008240
Alignment:
| Q |
18 |
agtttgcaccacctaaaagatgggtgcaagtaagtgatataatatgaagagagagtgattgtcaaaa-aatgacgtgttgaataagtttatgaaatttag |
116 |
Q |
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| T |
42007939 |
agtttgcaccacctaatagatgggtgcaagtaggtgatataatatgaagagagagtgattgtcaaaaaaatgacgtgttgaataagtttatgaaatttag |
42008038 |
T |
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| Q |
117 |
aagtgttcatgtactattgttgccatagatgt----agcaaagtgcatgtattcacatctgagaatttgttaatggttaggnnnnnnnnngtcccta--- |
209 |
Q |
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| T |
42008039 |
aagtgttcatgtactattgttgccatagatgtagcaagcaaagtgcatgtattcgcatctgagaattcgttaatggttaggtttttttttgtccctatat |
42008138 |
T |
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| Q |
210 |
-tattttttcactgcattcctccctatactgagatcttttattgtttagtccaccgactaaacacgagaactaaatattaaaaagtgaaaaactattagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
42008139 |
ttattttttcactgcattcctccctatactgagatcttttattatttagtc-----------cacgagaactaaatattgaaaagtgaaaaactattaga |
42008227 |
T |
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| Q |
309 |
tagaacctatgct |
321 |
Q |
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|||||||| |||| |
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| T |
42008228 |
tagaacctgtgct |
42008240 |
T |
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