View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11126_low_15 (Length: 283)
Name: NF11126_low_15
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6613542 - 6613805
Alignment:
| Q |
1 |
atattgttgaatgtcatcgtgaaatgcaaaatatcagacttaacagttcagaaaacagccagagccaattgttagaagtgaggaaaagaatgaacagacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6613542 |
atattgttgaatgtcatcgtgaaatgcaaaatatcagacttaatagttcagaaaacagccagagccaattgttagaagtgaggaaaagaatgaacagacc |
6613641 |
T |
|
| Q |
101 |
actagctcaagatgatgcatattggcgtcaaagagcgaaagcttattggtttcgtgacggagaccgtaacacaaaattcttccatgctgctgctactgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6613642 |
actagctcaagatgatgcatattggcgtcaaagagcgaaagcttattggtttcgtgacggagaccgtaacacaaaattcttccatgctgctgctactgcg |
6613741 |
T |
|
| Q |
201 |
cgtaagaaggtgaatcgcttactctcgcttgaagataatgccggtaataaagtctcgaatgatc |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6613742 |
cgtaagaaggtgaatcgcttactctcgcttgaagataatgccggtaataaagtctcgaatgatc |
6613805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 21813466 - 21813380
Alignment:
| Q |
101 |
actagctcaagatgatgcatattggcgtcaaagagcgaaagcttattggtttcgtgacggagaccgtaacacaaaattcttccatgc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || || |||||| || || |||||| | ||||||||||| |||||||| |
|
|
| T |
21813466 |
actagctcaagatgatgcatattggcgtcaacgtgccaagactcattggtaccgggatggagactgcaacacaaaatttttccatgc |
21813380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University