View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_low_16 (Length: 283)

Name: NF11126_low_16
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_low_16
NF11126_low_16
[»] chr3 (2 HSPs)
chr3 (17-273)||(25915051-25915307)
chr3 (17-273)||(25901033-25901289)
[»] chr4 (9 HSPs)
chr4 (17-267)||(10571036-10571286)
chr4 (19-267)||(10553306-10553554)
chr4 (219-267)||(10482452-10482500)
chr4 (217-267)||(10475482-10475532)
chr4 (142-267)||(10464472-10464597)
chr4 (213-265)||(838005-838057)
chr4 (219-267)||(10468313-10468361)
chr4 (222-264)||(8437060-8437102)
chr4 (222-264)||(8447414-8447456)
[»] chr7 (1 HSPs)
chr7 (217-264)||(19645452-19645499)
[»] chr5 (1 HSPs)
chr5 (157-267)||(37935285-37935395)
[»] chr2 (1 HSPs)
chr2 (221-261)||(21021047-21021087)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 25915307 - 25915051
Alignment:
Q  17 aaattagttatcagaatttttgttcaagccaatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915307 aaattagttatcagaatttttgttcaagccaatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgat 25915208  T
Q  117 attagcaaatgatcaaatcgacacagcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25915207 attagcaaatgatcaaatcgacacagcatttatctataaatgcagagaaaatagaggcgagccaattcaaattactaataaagtacggtggttgtgggct 25915108  T
Q  217 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915107 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcat 25915051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 25901289 - 25901033
Alignment:
Q  17 aaattagttatcagaatttttgttcaagccaatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgat 116  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25901289 aaattagttatcagaatatttgttcaagccaatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaaaggtgatgcattgat 25901190  T
Q  117 attagcaaatgatcaaatcgacacagcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggct 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||     
T  25901189 attagcaaatgatcaaatcgacgcagcatttatctataaatgcagagaaaatagaggcgagccaattcaaattactaataaagtacagtggttgtgggcc 25901090  T
Q  217 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttttcat 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25901089 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctttctcat 25901033  T

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Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 10571286 - 10571036
Alignment:
Q  17 aaattagttatcagaatttttgttcaagccaatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgat 116  Q
    ||||||||||| |||||||   ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  |||||||    
T  10571286 aaattagttatgagaatttccattcaagcgaatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaatgcggaaacattgat 10571187  T
Q  117 attagcaaatgatcaaatcgacacagcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggct 216  Q
    ||| ||||||||| ||| ||||||| ||||||||||||| |||||||| |||||||| |||| ||||  ||||||||||||| || ||||||| |||||     
T  10571186 atttgcaaatgatgaaaacgacacaacatttatctataattgcagagacaatagaggcgagcaaattagaattactaataaaatatggtggttatgggcc 10571087  T
Q  217 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt 267  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  10571086 aaggattacgttgaaagtttggttccaactcgatgaaagtgagtttctctt 10571036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 10553554 - 10553306
Alignment:
Q  19 attagttatcagaatttttgttcaagccaatctttattgaaatttgaaacgatggagttcttgccattgtacctttctaagaaaggtgatgcattgatat 118  Q
    ||||||||| |||||||   ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||  |||||||||    
T  10553554 attagttatgagaatttccattcaagcgaatatttattgaaatttgaaacgatggagttattgccattgtacctttctaagaatgcggaaacattgatat 10553455  T
Q  119 tagcaaatgatcaaatcgacacagcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaa 218  Q
    | ||||||||| ||| ||||||| ||||||||||||| |||||||| |||||||| |||| ||||  ||||||||||||| || ||||||| ||||| ||    
T  10553454 ttgcaaatgatgaaaacgacacaacatttatctataattgcagagacaatagaggcgagcaaattagaattactaataaaatatggtggttatgggccaa 10553355  T
Q  219 ggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt 267  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||    
T  10553354 ggattacgttgaaagtttggttccaactcgatgaaagtgagtttctctt 10553306  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 10482452 - 10482500
Alignment:
Q  219 ggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt 267  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||    
T  10482452 ggattacgttgaaagtttggtttcgactcattgaaagtgagtttctctt 10482500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 10475482 - 10475532
Alignment:
Q  217 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt 267  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||||||||||    
T  10475482 aaggattacgttgaaagtttagtttcgacacgttgaaagtgagtttctctt 10475532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 10464472 - 10464597
Alignment:
Q  142 gcatttatctataaatgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggttt 241  Q
    ||||||||||||||| ||| ||| |||||||  |||| ||||  |||||||| ||  |||   ||||||   || |||||||||||||||||| | ||||    
T  10464472 gcatttatctataaaggcaaagacaatagagtagagcgaattggaattactagtactgtattatggttgcatgccaaggattacgttgaaagtctagttt 10464571  T
Q  242 caactagttgaaagtgagtttctctt 267  Q
    | ||  ||||||||||||||||||||    
T  10464572 cgacacgttgaaagtgagtttctctt 10464597  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 838005 - 838057
Alignment:
Q  213 ggctaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctc 265  Q
    ||||||||||||| |||||||||||||||||| |  |||||| ||||||||||    
T  838005 ggctaaggattactttgaaagtttggtttcaattcattgaaaatgagtttctc 838057  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 10468313 - 10468361
Alignment:
Q  219 ggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt 267  Q
    |||||||||||||||||||||||  |||  |||||||||||||||||||    
T  10468313 ggattacgttgaaagtttggttttgactcattgaaagtgagtttctctt 10468361  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 8437102 - 8437060
Alignment:
Q  222 ttacgttgaaagtttggtttcaactagttgaaagtgagtttct 264  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  8437102 ttacgttgaaagtttggtttcgactcgttgaatgtgagtttct 8437060  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 8447456 - 8447414
Alignment:
Q  222 ttacgttgaaagtttggtttcaactagttgaaagtgagtttct 264  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||    
T  8447456 ttacgttgaaagtttggtttcgactcgttgaatgtgagtttct 8447414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 19645499 - 19645452
Alignment:
Q  217 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 264  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  19645499 aaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttct 19645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 37935285 - 37935395
Alignment:
Q  157 tgcagagaaaatagaggtgagccaattcaaattactaataaagtacggtggttgtgggctaaggattacgttgaaagtttggtttcaactagttgaaagt 256  Q
    |||||||| |||| | |||||  ||||  ||||||||||| |  | |||||||| |||| |||||||||||||||||||||||| | |||   |||||||    
T  37935285 tgcagagagaataaatgtgagaaaattagaattactaatagaacatggtggttgcgggcaaaggattacgttgaaagtttggttccgactcaatgaaagt 37935384  T
Q  257 gagtttctctt 267  Q
    |||| ||||||    
T  37935385 gagtctctctt 37935395  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 21021087 - 21021047
Alignment:
Q  221 attacgttgaaagtttggtttcaactagttgaaagtgagtt 261  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 21021047  T

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