View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_low_2 (Length: 744)

Name: NF11126_low_2
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_low_2
NF11126_low_2
[»] chr3 (13 HSPs)
chr3 (12-727)||(49108596-49109311)
chr3 (164-304)||(35539614-35539753)
chr3 (148-223)||(33831981-33832056)
chr3 (148-220)||(36902367-36902439)
chr3 (104-304)||(46048844-46049048)
chr3 (121-194)||(19900201-19900276)
chr3 (112-275)||(41211954-41212118)
chr3 (263-340)||(52744642-52744721)
chr3 (156-237)||(54422740-54422821)
chr3 (177-304)||(45603395-45603522)
chr3 (136-185)||(3973475-3973525)
chr3 (136-185)||(3996352-3996402)
chr3 (155-192)||(30595153-30595190)
[»] chr4 (20 HSPs)
chr4 (104-304)||(2396260-2396462)
chr4 (155-304)||(35331944-35332092)
chr4 (115-296)||(10180582-10180764)
chr4 (148-304)||(39055170-39055325)
chr4 (105-304)||(35144352-35144551)
chr4 (148-304)||(35308945-35309101)
chr4 (155-220)||(2574093-2574158)
chr4 (134-340)||(24030617-24030827)
chr4 (148-294)||(49211035-49211182)
chr4 (155-297)||(12447433-12447575)
chr4 (148-274)||(22628476-22628602)
chr4 (165-302)||(23359127-23359263)
chr4 (104-207)||(8824926-8825030)
chr4 (155-275)||(52199818-52199937)
chr4 (157-273)||(53096599-53096715)
chr4 (115-275)||(25435893-25436054)
chr4 (160-279)||(39629179-39629297)
chr4 (122-209)||(30865871-30865960)
chr4 (155-304)||(35382325-35382472)
chr4 (235-276)||(54232693-54232734)
[»] chr8 (29 HSPs)
chr8 (155-304)||(18806529-18806677)
chr8 (155-304)||(6519004-6519151)
chr8 (117-304)||(13628997-13629186)
chr8 (117-304)||(13729409-13729598)
chr8 (155-275)||(28540686-28540806)
chr8 (133-228)||(9604538-9604635)
chr8 (117-304)||(35973346-35973535)
chr8 (155-304)||(31226430-31226578)
chr8 (157-273)||(23036811-23036927)
chr8 (148-296)||(4797201-4797350)
chr8 (155-279)||(2603058-2603181)
chr8 (157-293)||(3628246-3628380)
chr8 (244-309)||(36317074-36317139)
chr8 (155-277)||(30714036-30714158)
chr8 (155-277)||(30721813-30721935)
chr8 (148-225)||(6427141-6427218)
chr8 (160-313)||(7288242-7288395)
chr8 (155-207)||(5978573-5978625)
chr8 (104-228)||(28567768-28567895)
chr8 (104-228)||(28575361-28575488)
chr8 (104-221)||(38937754-38937873)
chr8 (154-293)||(5139648-5139785)
chr8 (127-223)||(12734028-12734125)
chr8 (155-237)||(23812598-23812681)
chr8 (119-191)||(23982222-23982295)
chr8 (155-293)||(5535765-5535902)
chr8 (155-237)||(9134166-9134247)
chr8 (155-209)||(11777722-11777776)
chr8 (226-279)||(4479616-4479669)
[»] chr6 (13 HSPs)
chr6 (119-304)||(32658386-32658572)
chr6 (115-297)||(7693890-7694074)
chr6 (113-183)||(9491836-9491908)
chr6 (168-304)||(33755768-33755903)
chr6 (148-287)||(6988184-6988322)
chr6 (213-289)||(1624193-1624269)
chr6 (119-220)||(32977416-32977519)
chr6 (115-191)||(25099050-25099128)
chr6 (115-209)||(387697-387794)
chr6 (155-222)||(18804218-18804285)
chr6 (119-207)||(22281824-22281914)
chr6 (155-221)||(1947018-1947084)
chr6 (155-220)||(5002414-5002479)
[»] chr1 (18 HSPs)
chr1 (148-296)||(42831653-42831801)
chr1 (124-304)||(52353749-52353930)
chr1 (117-267)||(51061618-51061770)
chr1 (115-223)||(38601004-38601112)
chr1 (155-304)||(47783614-47783762)
chr1 (104-185)||(11566958-11567037)
chr1 (155-220)||(44665360-44665425)
chr1 (157-274)||(49003354-49003471)
chr1 (106-304)||(51504493-51504693)
chr1 (148-220)||(11120560-11120632)
chr1 (155-275)||(11449237-11449356)
chr1 (155-275)||(13984053-13984172)
chr1 (117-209)||(11241534-11241628)
chr1 (198-297)||(47364380-47364479)
chr1 (125-220)||(43822759-43822856)
chr1 (155-193)||(36297998-36298036)
chr1 (117-191)||(9505556-9505632)
chr1 (148-209)||(51263198-51263259)
[»] chr7 (20 HSPs)
chr7 (155-300)||(43302083-43302227)
chr7 (148-293)||(48615259-48615404)
chr7 (115-258)||(2008562-2008707)
chr7 (104-304)||(4958199-4958405)
chr7 (106-209)||(48767212-48767318)
chr7 (155-304)||(29914362-29914512)
chr7 (155-237)||(39853784-39853866)
chr7 (117-221)||(32724206-32724315)
chr7 (104-295)||(19987120-19987314)
chr7 (153-304)||(36657849-36657999)
chr7 (160-223)||(46282171-46282234)
chr7 (133-220)||(6068088-6068177)
chr7 (158-304)||(44441609-44441755)
chr7 (106-304)||(47841382-47841582)
chr7 (148-267)||(36901033-36901153)
chr7 (148-204)||(44441347-44441403)
chr7 (148-239)||(23156266-23156356)
chr7 (148-185)||(4874945-4874982)
chr7 (231-304)||(9429729-9429802)
chr7 (115-185)||(38223948-38224020)
[»] chr2 (21 HSPs)
chr2 (148-304)||(6710832-6710987)
chr2 (104-209)||(40999639-40999747)
chr2 (133-296)||(34375041-34375203)
chr2 (104-274)||(65383-65554)
chr2 (148-279)||(5038719-5038852)
chr2 (160-339)||(11921964-11922144)
chr2 (155-237)||(44887267-44887349)
chr2 (148-304)||(3668846-3669002)
chr2 (115-196)||(32887670-32887753)
chr2 (155-207)||(36887626-36887678)
chr2 (155-304)||(9583157-9583305)
chr2 (160-304)||(16117872-16118016)
chr2 (115-220)||(34234858-34234964)
chr2 (155-258)||(18970011-18970114)
chr2 (190-304)||(15269247-15269360)
chr2 (155-293)||(26312486-26312623)
chr2 (155-192)||(13022796-13022833)
chr2 (199-304)||(28857137-28857242)
chr2 (251-304)||(31050069-31050122)
chr2 (148-209)||(31050160-31050221)
chr2 (155-204)||(39368749-39368798)
[»] chr5 (13 HSPs)
chr5 (104-304)||(41520822-41521024)
chr5 (148-277)||(2375556-2375684)
chr5 (148-293)||(42551051-42551197)
chr5 (148-296)||(8228774-8228922)
chr5 (115-223)||(15468163-15468273)
chr5 (160-274)||(35463217-35463332)
chr5 (164-294)||(1666743-1666872)
chr5 (148-304)||(29558345-29558500)
chr5 (199-343)||(11200453-11200599)
chr5 (133-279)||(4432323-4432469)
chr5 (153-219)||(12593139-12593205)
chr5 (155-204)||(13486599-13486648)
chr5 (263-304)||(31046320-31046361)
[»] scaffold0036 (1 HSPs)
scaffold0036 (199-297)||(63609-63707)


Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 12 - 727
Target Start/End: Complemental strand, 49109311 - 49108596
Alignment:
Q  12 agagacttaagatcacccccaacggaagagtcttaaccttttaagacacggtatctattagtattctattaggagagaagtattttcggggtcttaagac 111  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  49109311 agagacgtaagatcatccccaacggaagggtcttaaccttttaagacacggtacctattagtatcctattaggagagaagtattttcggggtcttaagac 49109212  T
Q  112 cctaa-tcttaagtgggaccgacactttttaaatgttaaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatg 210  Q
    || || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  49109211 cccaaatcttaagtgagaccaacactttttaaatgttaaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaaaaaata 49109112  T
Q  211 tgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcatttacgtaaa 310  Q
    ||||||||||||| ||||||||||||| | |  |||||| ||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  49109111 tgtatgagatgctcggtttgagagattgagtgcttattaggtactactaatgaaaagttataaataaataatttgtacgcgtgagactcatttacgtaaa 49109012  T
Q  311 aaag--tgaatgtcttcgttgtagatgctctaagaagtaaatggaacacattggttgtgggaggaaagagttacatcaacatcttgattcatcttcacgg 408  Q
    |||   |||||||||||  |||   || |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49109011 aaaaaatgaatgtcttcactgt---tgttctaagaagtaaatggtatacattggttgtgggaggaaagagtcacatcaacatcttgattcatcttcacgg 49108915  T
Q  409 ctcactattcaatttctaacttgtttgtgcatagcaacttgaactcttgcagaaggtatcttcgactaataaattgtgaactagtaattagaaacaaact 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49108914 ctcactattcaatttctaacttgtttgtgcatagcaacttgaactctttcagaaggtatctttgactaataaattgtgaactagtaattagaaacaaact 49108815  T
Q  509 agccagaaggtcctaaatagaacagaacaatccgtgttttcatttccagctgtagaatttggtaaatgtagattgttccaaagaattcataggtaagaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108814 agccagaaggtcctaaatagaacagaacaatccgtgttttcatttccagctgtagaatttggtaaatgtagattgttccaaagaattcataggtaagaac 49108715  T
Q  609 cagttgtgaaacttatctagattcaatgtaaaaggttataaaatataaacgagtttaaaatttcatctaagtccggggacaaattaagtccaattccaca 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  49108714 cagttgtgaaacttatctagattcaatgtaaaaggttataaaatataaatgagtttaaaatttcacctaagtcaggggacaaattaagtccaattccaca 49108615  T
Q  709 atacgacacttgtaagaag 727  Q
    |||| ||||||||||||||    
T  49108614 atacaacacttgtaagaag 49108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 164 - 304
Target Start/End: Original strand, 35539614 - 35539753
Alignment:
Q  164 gatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttga 263  Q
    |||||||| ||||||||||||| ||| ||| | ||||||||||| | ||| |||||| || |||| ||| |||  | | ||||||| |||||||| || |    
T  35539614 gatataaagttattgatagttgattaatgggtcccatttaagaactttgtgtgagat-cttggttggagtgatcgagtgtttattaggtactactattaa 35539712  T
Q  264 aaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  35539713 aaaattataaataaatgatgtgtacacgtgagactcattta 35539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 33832056 - 33831981
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgct 223  Q
    |||| |||| ||||||||||| || ||||||||||||| ||||||||||||||| ||||||| ||| |||||||||    
T  33832056 aaaattaaattgtaatgatatgaaattattgatagttgattagtggattccattaaagaaatttgtgtgagatgct 33831981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 36902439 - 36902367
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||| |||||| |||||||||||| ||||||||||||| |||||| ||| |||||||||||| ||| ||||||    
T  36902439 aaaattaaaatataatgatataaagttattgatagttgattagtgaatttcatttaagaaatttgtttgagat 36902367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 46048844 - 46049048
Alignment:
Q  104 cttaagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccat 200  Q
    ||||||||||| |||||||||||||||| | || |||  ||| |||||||  |   |||||||| |||||| ||||||||||||| || |||  ||||||    
T  46048844 cttaagaccctcaatcttaagtgggacccaaacctttgtaatattaaaaaattgttatgtaatggtataaagttattgatagttgatttgtgagttccat 46048943  T
Q  201 ttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgtt-gaaaaattataaataaataatttgtacacgtgagactc 299  Q
    ||||||| | ||| |||||||||  ||| ||| ||||  ||| |||||| |||||| | ||  ||||||||||||| | |||| | |||| ||||||| |    
T  46048944 ttaagaactttgtgtgagatgctgagttggagggattggatacttattaggtactaatattaaaaaaattataaatgagtaatgtttacatgtgagaccc 46049043  T
Q  300 attta 304  Q
    |||||    
T  46049044 attta 46049048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 19900276 - 19900201
Alignment:
Q  121 aagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtgga 194  Q
    |||||||| | ||||||||| ||| |||||||  ||||||||||||||||||| ||||| ||||||| ||||||||    
T  19900276 aagtgggatctacacttttttaatattaaaaaattaaaatgtaatgatataaaattatttatagttgattagtgga 19900201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 275
Target Start/End: Original strand, 41211954 - 41212118
Alignment:
Q  112 cctaatcttaagtgggaccgacactttttaaatgttaaaaat-aaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatg 210  Q
    ||||| |||||||| |||   ||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||| |||||   |  |||||||||||      
T  41211954 cctaaccttaagtgtgactcgcacctttttaatattaaaaattaaaatgtaatgatataaagttattgatagttgattagtatgtctcatttaagaaact 41212053  T
Q  211 tgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaat 275  Q
    ||||||||||| | | || ||| |||| | |  |||||| |||||||| ||  ||||||||||||    
T  41212054 tgtatgagatgttcgattggagggatttactgcttattaggtactactattacaaaattataaat 41212118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 52744721 - 52744642
Alignment:
Q  263 aaaaattataaataaataatttgtacacgtgagactcatttacgta--aaaaagtgaatgtcttcgttgtagatgctcta 340  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||  ||||| ||||||||| | |||| |||| ||||    
T  52744721 aaaaattataaataagtaatgtgtacacgtgagactcatttaagtagtaaaaaatgaatgtctccattgtggatgttcta 52744642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 54422740 - 54422821
Alignment:
Q  156 aatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagatt 237  Q
    |||||||||||||||| ||||||||| ||| ||||||| |  |||||||||||| ||  | |||| ||||||| ||||||||    
T  54422740 aatgtaatgatataaaattattgataattgattagtgggtctcatttaagaaatttgcgttagatactaggttggagagatt 54422821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 45603522 - 45603395
Alignment:
Q  177 tgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaata 276  Q
    ||||| ||| ||||||| |  ||||||| |||| ||| ||||||| | | ||| || |||| | | |||||||||||||| | ||  ||||||||||||     
T  45603522 tgatatttgattagtgggtcacatttaaaaaatttgtgtgagatgttggatttaagggattgagtgtttattaagtactattattataaaattataaatg 45603423  T
Q  277 aataatttgtacacgtgagactcattta 304  Q
    ||| || |||| ||||||||||||||||    
T  45603422 aatgatgtgtatacgtgagactcattta 45603395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 3973525 - 3973475
Alignment:
Q  136 tttttaaatgttaaaaat-aaaatgtaatgatataaatttattgatagttg 185  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||| ||||    
T  3973525 ttttttaatattaaaaattaaaatgtaatgatataaatttattgatggttg 3973475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 3996352 - 3996402
Alignment:
Q  136 tttttaaatgttaaaaat-aaaatgtaatgatataaatttattgatagttg 185  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||| ||||    
T  3996352 ttttttaatattaaaaattaaaatgtaatgatataaatttattgatggttg 3996402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 30595190 - 30595153
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtg 192  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  30595190 aaatgtaatgatataaaattattgatagttgattagtg 30595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 2396260 - 2396462
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatt 201  Q
    |||||||||| | | ||||| ||||||  || ||||| ||| |||||||  | ||||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  2396260 cttaagaccccacttttaagagggaccctcaattttttaatattaaaaacttgaaatgtactgatataaagttattgatagttgattagtgggttccatt 2396359  T
Q  202 taagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcat 301  Q
    |||||||| | | |||||||||  ||||||| |||| | |  |||||| |||||||| || | ||||||||||||| | || |||||||||| |||||||    
T  2396360 taagaaatttttgtgagatgctgagtttgagcgattgagttcttattaggtactactattaacaaattataaataagtgatgtgtacacgtgggactcat 2396459  T
Q  302 tta 304  Q
    |||    
T  2396460 tta 2396462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 35332092 - 35331944
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| | ||| |||||| || |||| ||| |||| | |  |||||| ||||    
T  35332092 aaatataatgatataaagttattgatagttgattagtggatcccatttaagaactttgtgtgagat-ctgggttggagtgattgagtgcttattatgtac 35331994  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||| ||||||||| |||| |||| ||||| ||||||||||    
T  35331993 tactattaaaaaagtataaataagtaatgtgtatacgtgggactcattta 35331944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 115 - 296
Target Start/End: Complemental strand, 10180764 - 10180582
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    |||||||||||||||| | || |||| ||| |||||||  | | ||||||||||||||| ||||||||||||| || ||||||  |||||||||||| ||    
T  10180764 aatcttaagtgggacccatacctttttaatattaaaaaattgatatgtaatgatataaagttattgatagttgatt-gtggatctcatttaagaaatttg 10180666  T
Q  213 tatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgaga 296  Q
    | | |||||||||||| |||  ||| | |  |||||| |||||||| || ||||||||||||| | | || |||||||||||||    
T  10180665 tgtaagatgctaggttggaggcattgagttcttattaggtactactattaaaaaattataaatgagtgatatgtacacgtgaga 10180582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 39055170 - 39055325
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||| || |||||||||| | ||| |||||| ||  ||| ||| |||| |||| ||||    
T  39055170 aaaattaaaatgtaatgatataaagttattgatagttgattagtgggtttcatttaagaactttgtgtgagat-ctgagttggagggatttaatacttat 39055268  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    || |||||| | || ||||||||||||| | | || ||||| |||||||| ||||||    
T  39055269 taggtactaatattaaaaaattataaatgagtgatgtgtacgcgtgagacccattta 39055325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 105 - 304
Target Start/End: Original strand, 35144352 - 35144551
Alignment:
Q  105 ttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccattt 202  Q
    ||||||||| ||| |||||||||||| |||  |||||| | |||||||  | |||||||||| |||||| ||||| || |||  | ||||||||| ||||    
T  35144352 ttaagaccccaattttaagtgggacccacatattttaa-tattaaaaaattgaaatgtaatggtataaaattattaatggtttatcagtggattctattt 35144450  T
Q  203 aagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcatt 302  Q
    ||||||| |||||||||| || |||| ||| |||| |||  ||||||  |||||||  | ||||||||||||||| | || |||||||||||||| ||||    
T  35144451 aagaaatttgtatgagat-ctgggttggagggattgaatgcttattagatactactactaaaaaattataaataattgatatgtacacgtgagacccatt 35144549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 35309101 - 35308945
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| |||||| |||||||||||| ||||||||||||| ||||||  | |||||||| |||  ||| |||| ||||||| | ||| |||| | || ||||    
T  35309101 aaaattaaaatataatgatataaagttattgatagttgattagtgagtcccatttaaaaaaattgtgtgagttgctaggctagagggattgagtacttat 35309002  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||  || |||| || ||||||||||||||| | |  ||||| |||||||||||||||    
T  35309001 tagatattactattaaaaaattataaataagtgacgtgtacgcgtgagactcattta 35308945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 2574158 - 2574093
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    ||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||||| ||||||||||    
T  2574158 aaatgtaatgatataaagttattaatagttgattagtgaattctatttaagaaatttgtatgagat 2574093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 340
Target Start/End: Original strand, 24030617 - 24030827
Alignment:
Q  134 actttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttga 231  Q
    ||||||| ||| |||||||  ||||||||||| || |||| ||||||||||||| ||||| || |||||| || | || ||| ||||||  || ||||||    
T  24030617 acttttttaatattaaaaaattaaaatgtaataatgtaaagttattgatagttgattagtagaatccattcaaaatatttgtgtgagatattaagtttga 24030716  T
Q  232 gagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcatttacg--taaaaaagtgaatgtcttcgttg 329  Q
      |||||| | ||||||  ||| |||| || |||||||||||| || | || |||||||||||  |||||||| |  ||||||| ||||||||| | ||     
T  24030717 tggattaagtttttattgggtattacttttaaaaaattataaacaagtgatatgtacacgtgatgctcatttaagactaaaaaattgaatgtctccatta 24030816  T
Q  330 tagatgctcta 340  Q
    | |||||||||    
T  24030817 ttgatgctcta 24030827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 49211035 - 49211182
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||| ||| ||| ||| |  |||||||| ||| | | |||||||||||||| ||| |||  | |  ||||    
T  49211035 aaaattaaaatgtaatgatataaagttattgataattgattaatgggtctcatttaaggaatttttgtgagatgctaggttggagggatagagttcttat 49211134  T
Q  248 taagtactactgtt-gaaaaattataaataaataatttgtacacgtga 294  Q
    ||  ||||||| ||  ||||||||||||||||| || |||||||||||    
T  49211135 tagatactactattaaaaaaattataaataaatgatatgtacacgtga 49211182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 297
Target Start/End: Original strand, 12447433 - 12447575
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||||||||| ||||||||||||| ||||||| |   ||||||||||| | | ||||||||| ||||  |  |||| | |  ||||||   ||    
T  12447433 aaatgtaatgatataaagttattgatagttgattagtgggtcttatttaagaaatttttgtgagatgctgggttaaaaggattgagttcttattatagac 12447532  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagac 297  Q
    |||| || ||||||||||||||| | |||||||| ||||||||    
T  12447533 tactattaaaaaattataaataagtgatttgtactcgtgagac 12447575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 22628476 - 22628602
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||  | |||||||| |||| ||| || |||  | |||  |||||||| | | |||||    
T  22628476 aaaattaaaatgtaatgatataaagttattgatagttgattagtgagtcccatttaaaaaatttgtgtgtgatattgggtcagagagattgagtgtttat 22628575  T
Q  248 taagtactactgttgaaaaattataaa 274  Q
    || ||||| || || ||||||||||||    
T  22628576 tatgtactcctattaaaaaattataaa 22628602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 23359127 - 23359263
Alignment:
Q  165 atataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaa 264  Q
    ||||||| ||||||||||||| || ||||||  |||||||||| | ||| |||||| ||||||| ||| |||| | |  ||||||  ||||||| || ||    
T  23359127 atataaagttattgatagttgatttgtggatctcatttaagaactttgtgtgagat-ctaggttggagtgattgagtgcttattagatactactattaaa 23359225  T
Q  265 aaattataaataaataatttgtacacgtgagactcatt 302  Q
    ||||||||||| ||| || |||| | ||||||||||||    
T  23359226 aaattataaatgaatgatgtgtatatgtgagactcatt 23359263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 8824926 - 8825030
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaata-aaatgtaatgatataaatttattgatagttggttagtggattccattt 202  Q
    |||||||||| | | ||||| |||||  ||||| ||| ||| ||||||||  |||| |||||||||||| ||||||||||||| ||||| | ||||||||    
T  8824926 cttaagaccccacttttaagcgggacgcacactcttttaatattaaaaattgaaatataatgatataaagttattgatagttgattagtaggttccattt 8825025  T
Q  203 aagaa 207  Q
    |||||    
T  8825026 aagaa 8825030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 52199818 - 52199937
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||| | ||||||||||| | ||||||| | ||||||||||| | ||| |||||| || |||| ||| |||| |||  |||||| ||||    
T  52199818 aaatataatgatatataattattgatagtggattagtgggtcccatttaagaactttgtgtgagat-ctgggttggagtgattgaatgcttattaggtac 52199916  T
Q  255 tactgttgaaaaattataaat 275  Q
    |||| || |||||||||||||    
T  52199917 tactattaaaaaattataaat 52199937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 53096715 - 53096599
Alignment:
Q  157 atgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtacta 256  Q
    ||||||| ||||||| ||||||||||||| ||||| | | ||||||||||||| ||| ||||||| | ||||  || |||| | |  |||||||||| ||    
T  53096715 atgtaataatataaagttattgatagttgattagttggtcccatttaagaaatttgtgtgagatgttgggttaaagggattgagttcttattaagtatta 53096616  T
Q  257 ctgttgaaaaattataa 273  Q
    || || |||||||||||    
T  53096615 ctattaaaaaattataa 53096599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 25436054 - 25435893
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    ||||||||||  |||  ||||||||||||| ||| |||  | |||||||||| |||||| ||||||||| | | ||||| ||| |||||||| |||| ||    
T  25436054 aatcttaagtttgacacacactttttaaatattataaaattgaaatgtaatgctataaagttattgataatggattagtcgatcccatttaaaaaat-tg 25435956  T
Q  213 tatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaat 275  Q
    | ||||||| | ||||  ||||||| |||| ||||||| ||||| | || | |||||||||||    
T  25435955 tgtgagatgttgggttgaagagattgaatacttattaaatactattattaataaattataaat 25435893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 39629297 - 39629179
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactg 259  Q
    |||||||||||| ||||||||||||| |||||||||  |||||||||| | ||| || ||| || |||| ||| |||| | |  ||||||  |||||||     
T  39629297 taatgatataaaattattgatagttgtttagtggatctcatttaagaactttgtgtgtgat-ctgggttggagtgatttagtgcttattagatactacta 39629199  T
Q  260 ttgaaaaattataaataaat 279  Q
    || |||||||||||||||||    
T  39629198 ttaaaaaattataaataaat 39629179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 30865871 - 30865960
Alignment:
Q  122 agtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    ||||| ||| ||||||||| ||| |||||||  | ||||||||||||||||| ||||||||||||| ||||||  |  ||||||||||||    
T  30865871 agtggaacctacacttttttaatattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaat 30865960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 35382472 - 35382325
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||| ||||||||| ||||||  |  |||||||||| | ||| ||| || || |||| ||| |||| |||  |||||| ||||    
T  35382472 aaatataatgatataaagttagtgatagttgattagtgtgtctcatttaagaactttgtgtgaaat-ctgggttggagtgattgaatgcttattatgtac 35382374  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||||||||||| ||| |  |||||||| ||||| ||||||    
T  35382373 tactattaaaaaattataaatgaatgaggtgtacacg-gagacccattta 35382325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 54232734 - 54232693
Alignment:
Q  235 attaaatatttattaagtactactgttgaaaaattataaata 276  Q
    |||||||||||||||| ||||| | |||||||||||||||||    
T  54232734 attaaatatttattaaatactaatattgaaaaattataaata 54232693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 18806677 - 18806529
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||||| ||||||||||| |||  ||| |||||||  |||    
T  18806677 aaatataatgatataaagttattgatagttgattagtggatcccatttaaaaaatttgtgtgagat-ctaggtttgagtgatcgaatgtttattagatac 18806579  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||||||||||||| | || ||||||||||| || ||||||    
T  18806578 tactattaaaaaattataaataagtgatgtgtacacgtgaaacccattta 18806529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 6519151 - 6519004
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||||||||| ||||||||||||| ||||||  |  |||||||||||| |||  |||||||| |||| |||||||| |||  |||||| ||||    
T  6519151 aaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaatttgt--gagatgctgggttggagagattgaattcttattaggtac 6519054  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||||||||||||| | || ||| |||||| ||| ||||||    
T  6519053 tactattaaaaaattataaataagtgatatgtgcacgtgggacccattta 6519004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 13629186 - 13628997
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgta 214  Q
    ||||||||||| || |||| |||| ||| |||||||  | | |||||||| |||||| ||||||||||||| ||  ||||| | ||||||||| | ||||    
T  13629186 tcttaagtgggtcccacacatttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatttctggatcctatttaagaattttgta 13629087  T
Q  215 tgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||||| | |||| ||| |||| | || ||||||  ||||||| || ||||||||||||| ||| || |||||| ||||||| ||||||    
T  13629086 tgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccattta 13628997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 13729598 - 13729409
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgta 214  Q
    ||||||||||| || |||| |||| ||| |||||||  | | |||||||| |||||| ||||||||||||| ||  ||||| | ||||||||| | ||||    
T  13729598 tcttaagtgggtcccacacatttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatttctggatcctatttaagaattttgta 13729499  T
Q  215 tgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||||| | |||| ||| |||| | || ||||||  ||||||| || ||||||||||||| ||| || |||||| ||||||| ||||||    
T  13729498 tgagatgttgggttggagggattgactacttattagatactactattaaaaaattataaatgaatgatgtgtacatgtgagacccattta 13729409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 28540686 - 28540806
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||||||||||||||||  |||||||||||| ||||||  |  | |||||||||| ||| ||||||||| |||| |||  ||| |||| |||||||||||    
T  28540686 aaatgtaatgatataaaactattgatagttgattagtgagtctcttttaagaaatttgtgtgagatgctgggttggagtaattgaatacttattaagtac 28540785  T
Q  255 tactgttgaaaaattataaat 275  Q
    |||| || |||||||||||||    
T  28540786 tactattaaaaaattataaat 28540806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 9604635 - 9604538
Alignment:
Q  133 cactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtt 228  Q
    |||| ||| |||||||||||  | |||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||| | ||||||||||| ||||    
T  9604635 cactcttttaatgttaaaaaattgaaatctaatgatataaagttattgatagttgattagtgggttccatttaagaaatttttatgagatgctgggtt 9604538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 35973535 - 35973346
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgta 214  Q
    ||||| |||||||| ||||||||| ||| |||||||  | | || |||||||||||  ||||||||| ||| ||||| |||  ||||||||||||||||     
T  35973535 tcttaggtgggacctacacttttttaatattaaaaaattgatatataatgatataatgttattgataattgattagtagatctcatttaagaaatgtgtg 35973436  T
Q  215 tgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||||  |  ||| ||  |||||| | ||||||| |||| ||| || ||||||||||||||| |||| ||||||| ||| ||| |||||    
T  35973435 tgagatattgagttggatggattaagtgtttattaggtacaactattaaaaaattataaataagtaatctgtacacatgaaacttattta 35973346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 31226578 - 31226430
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| |||||||||||||  |||||| | ||||||||||| | ||| |||||| ||||||| ||| | || | ||||||||| ||||    
T  31226578 aaatataatgatataaaattattgatagttgagtagtgggtcccatttaagaactttgtgtgagat-ctaggttggagtgtttgagtatttattaggtac 31226480  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||||||||||| | | || |||||| |||| || ||||||    
T  31226479 tactattaaaaaattataaatgagtgatgtgtacatgtgacacccattta 31226430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 23036811 - 23036927
Alignment:
Q  157 atgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtacta 256  Q
    ||||||||||||||| ||||||||||||| | |||||||| |  ||||||||| ||| ||||||||| ||||  ||||||| | |  ||||||  |||||    
T  23036811 atgtaatgatataaaattattgatagttgatcagtggatttctattaagaaatttgtgtgagatgctgggttgaagagattgagttcttattagatacta 23036910  T
Q  257 ctgttgaaaaattataa 273  Q
    || ||||||||||||||    
T  23036911 ctattgaaaaattataa 23036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 4797350 - 4797201
Alignment:
Q  148 aaaaataaaatgtaatgatat-aaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatattta 246  Q
    |||| |||||||| ||||||| ||| ||||||||||||| ||| ||  |  |||||||||||| ||| |||||||||  ||| ||| ||||| |||||||    
T  4797350 aaaattaaaatgtgatgatattaaagttattgatagttgattaatgagtcacatttaagaaatttgtgtgagatgctgagttggagggattagatattta 4797251  T
Q  247 ttaagtactactgttgaaaaattataaataaataatttgtacacgtgaga 296  Q
    |||| | ||||| || ||||||||||||| | | ||  ||||||||||||    
T  4797250 ttaaatgctactattaaaaaattataaattagtgatacgtacacgtgaga 4797201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 2603181 - 2603058
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| | ||| |||||| || | || ||| |||| | || ||||||  |||    
T  2603181 aaatgtagtgatataaagttattgatagttgattagtggatctcatttaagaactttgtgtgagat-ctggattggagggattgagtacttattagatac 2603083  T
Q  255 tactgttgaaaaattataaataaat 279  Q
    |||| || |||||||||||||||||    
T  2603082 tactattaaaaaattataaataaat 2603058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 293
Target Start/End: Original strand, 3628246 - 3628380
Alignment:
Q  157 atgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtacta 256  Q
    ||||||||||||||| |||||| |||||| ||| || ||| |||||||||||| |||  ||||| ||  ||| |||  ||| | |  |||||||| ||||    
T  3628246 atgtaatgatataaagttattgctagttgattaatgaatttcatttaagaaatttgt--gagatactgagttggaggaatttagtgcttattaagcacta 3628343  T
Q  257 ctgttgaaaaattataaataaataatttgtacacgtg 293  Q
    || || ||||||||||||||||| || ||||||||||    
T  3628344 ctattaaaaaattataaataaatgatatgtacacgtg 3628380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 36317074 - 36317139
Alignment:
Q  244 ttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcatttacgtaa 309  Q
    |||||| |||||||  ||||| |||||||||||||| || ||||||||||||||||||||| ||||    
T  36317074 ttattaggtactacgattgaataattataaataaatgatgtgtacacgtgagactcatttaagtaa 36317139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 30714158 - 30714036
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||||||||| ||||||||||||| ||||||  | |||||||  |||| ||| ||||||| | | || || | ||||| |  |||||| ||||    
T  30714158 aaatgtaatgatataaagttattgatagttgattagtgagtcccatttacaaaatttgtgtgagatgttggattggaaatattaagtgcttattatgtac 30714059  T
Q  255 tactgttgaaaaattataaataa 277  Q
    |||| || ||| |||||||||||    
T  30714058 tactattaaaatattataaataa 30714036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 30721935 - 30721813
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||||||||| ||||||||||||| ||||||  | |||||||  |||| ||| ||||||| | | || || | ||||| |  |||||| ||||    
T  30721935 aaatgtaatgatataaagttattgatagttgattagtgagtcccatttacaaaatttgtgtgagatgttggattggaaatattaagtgcttattatgtac 30721836  T
Q  255 tactgttgaaaaattataaataa 277  Q
    |||| || ||| |||||||||||    
T  30721835 tactattaaaatattataaataa 30721813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 6427218 - 6427141
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctag 225  Q
    |||| |||||| |||||||||||| ||||||||||||| ||||| | | | |||||| |||| ||| |||||||||||    
T  6427218 aaaattaaaatataatgatataaaattattgatagttgattagtaggtcctatttaaaaaatttgtgtgagatgctag 6427141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 7288242 - 7288395
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactg 259  Q
    |||||||||||| |||| |||||||| |||||   |  |||||||||||| | ||||||||||| |||| ||| |||||| |  ||||||  |||||||     
T  7288242 taatgatataaagttatcgatagttgattagtaagtctcatttaagaaatttctatgagatgctgggttggagggattaagttcttattagatactacta 7288341  T
Q  260 ttgaaaaattataaataaataatttgtacacgtgagactcatttacgtaaaaaa 313  Q
    |  || |||||||||||| | || | || || ||||||||||||| ||| ||||    
T  7288342 tgaaacaattataaataagtgatatctatacatgagactcatttaagtataaaa 7288395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 5978625 - 5978573
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaa 207  Q
    |||| |||||||||||| ||||||||||||| ||||||| | |||||||||||    
T  5978625 aaatataatgatataaagttattgatagttgattagtgggtcccatttaagaa 5978573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 28567768 - 28567895
Alignment:
Q  104 cttaagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggtta--gtggattcc 198  Q
    ||||||||||| ||||||||| |||||| || || ||| ||| |||||||  | |||| |||||||||||| ||||||||||||| |||  |||| |  |    
T  28567768 cttaagaccctcaatcttaagcgggacccactctattttaatattaaaaaattgaaatataatgatataaagttattgatagttgcttatcgtggct--c 28567865  T
Q  199 atttaagaaatgtgtatgagatgctaggtt 228  Q
    ||||||| ||| ||||||||||||| ||||    
T  28567866 atttaagtaatttgtatgagatgctgggtt 28567895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 28575361 - 28575488
Alignment:
Q  104 cttaagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggtta--gtggattcc 198  Q
    ||||||||||| ||||||||| |||||| || || ||| ||| |||||||  | |||| |||||||||||| ||||||||||||| |||  |||| |  |    
T  28575361 cttaagaccctcaatcttaagcgggacccactctcttttaatattaaaaaattgaaatataatgatataaagttattgatagttgcttatcgtggct--c 28575458  T
Q  199 atttaagaaatgtgtatgagatgctaggtt 228  Q
    ||||||| ||| ||||||||||||| ||||    
T  28575459 atttaagtaatttgtatgagatgctgggtt 28575488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 38937754 - 38937873
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatt 201  Q
    |||||||||| |||||||||||| ||| |||  |||| ||| |||||||  ||| |||| |||||||||| || |||||||||| || |||||| | |||    
T  38937754 cttaagaccccaatcttaagtggaacccacatctttttaatattaaaaaattaatatgtgatgatataaagttgttgatagttgatttgtggatcctatt 38937853  T
Q  202 taagaaatgtgtatgagatg 221  Q
    ||| || | ||| |||||||    
T  38937854 taaaaactttgtgtgagatg 38937873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 293
Target Start/End: Complemental strand, 5139785 - 5139648
Alignment:
Q  154 aaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagta 253  Q
    ||||| |||||||||||| ||||||||||||| ||||||  || |||||||||  | ||| |||||| || |||| ||| |||||| || |||||| |||    
T  5139785 aaaatataatgatataaaattattgatagttgattagtgagtttcatttaagagctttgtgtgagat-ctgggttggagtgattaagta-ttattaggta 5139688  T
Q  254 ctactgttgaaaaattataaataaataatttgtacacgtg 293  Q
    ||||  |  |||||||||||| || | || ||||||||||    
T  5139687 ctacattaaaaaaattataaacaagttatgtgtacacgtg 5139648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 12734028 - 12734125
Alignment:
Q  127 gaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgct 223  Q
    |||| ||||||||| ||| |||||||  ||||||||||||||||||| ||   |||||||| ||||||| |  |||||||||||| ||| |||||||||    
T  12734028 gacctacacttttttaatattaaaaaattaaaatgtaatgatataaagttgaggatagttgattagtgg-tctcatttaagaaatttgtgtgagatgct 12734125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 23812681 - 23812598
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaa-tgtgtatgagatgctaggtttgagagatt 237  Q
    |||| |||| ||||||| ||||||||||||| |||||| || |||||||| ||| | ||| ||||||||||| || ||||||||    
T  23812681 aaatataattatataaagttattgatagttgattagtgaataccatttaaaaaattttgtgtgagatgctagattggagagatt 23812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 23982222 - 23982295
Alignment:
Q  119 ttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagt 191  Q
    ||||| |||||| ||||||||| ||| |||||||  | |||| |||||||||||| |||||||||||||||||||    
T  23982222 ttaagcgggacc-acacttttttaatattaaaaaattgaaatataatgatataaagttattgatagttggttagt 23982295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 293
Target Start/End: Complemental strand, 5535902 - 5535765
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||||||| ||||| || |||| |||| |||||||| | ||| |||||| ||||||| ||| |||| | |  |||| | ||||    
T  5535902 aaatataatgatataaagttattgaaagttgatttgtgggttccgtttaagaactttgtgtgagat-ctaggttggagtgattgagtgcttataaggtac 5535804  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtg 293  Q
    || | || ||||||||||||| | | || ||||||||||    
T  5535803 taatattaaaaaattataaatgagtgatgtgtacacgtg 5535765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 9134166 - 9134247
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagatt 237  Q
    |||| |||||||||||| ||||||||||||| ||||||  |  |||||||||| | ||| |||||| ||||||||||| ||||    
T  9134166 aaatataatgatataaagttattgatagttgattagtgagtctcatttaagaactttgtgtgagat-ctaggtttgagtgatt 9134247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 11777776 - 11777722
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    ||||||||||||||||| ||||||||||||| ||||| | |  ||||||||||||    
T  11777776 aaatgtaatgatataaagttattgatagttgattagtaggtctcatttaagaaat 11777722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 4479616 - 4479669
Alignment:
Q  226 gtttgagagattaaatatttattaagtactactgttgaaaaattataaataaat 279  Q
    |||| ||| ||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  4479616 gtttaagatattaaatgtttgttaagtactacagttaaaaaattataaataaat 4479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 119 - 304
Target Start/End: Complemental strand, 32658572 - 32658386
Alignment:
Q  119 ttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatg 216  Q
    ||||| |||||| ||||| ||| ||| |||||||  |||||| || ||||||||| ||||||||||||| ||||||||||||||||||||| | ||| ||    
T  32658572 ttaagcgggacccacactcttttaatattaaaaaattaaaatatactgatataaagttattgatagttgattagtggattccatttaagaactttgtgtg 32658473  T
Q  217 agatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||  | |||| ||| |||| | | ||||||| |||||||| || ||||||||||||| | | || ||| |||||||||| ||||||    
T  32658472 agat-atgggttggagtgatttagtgtttattaggtactactattaaaaaattataaatgagtgatgtgtccacgtgagacccattta 32658386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 7694074 - 7693890
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    ||||||||| |||||| ||||||||| ||| |||||||  | ||||||| |||||| || ||||||||||||| ||||||| |||||||||| |||| ||    
T  7694074 aatcttaagagggacctacacttttttaatattaaaaaattgaaatgtattgatatgaagttattgatagttgattagtgggttccatttaaaaaatttg 7693975  T
Q  213 tatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagac 297  Q
    | ||||||  | |||| ||| |||| | || |||||| |||||| |  | ||||||||||||| | | || |||| |||||||||    
T  7693974 tgtgagattatgggttggagggattgagtacttattaggtactattactaaaaaattataaatgagtgatgtgtatacgtgagac 7693890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 9491908 - 9491836
Alignment:
Q  113 ctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagt 183  Q
    |||||||||||||||||| ||| ||||| ||| |||||||  ||||||||||||||||||| |||||||||||    
T  9491908 ctaatcttaagtgggacccacatttttttaatattaaaaaattaaaatgtaatgatataaagttattgatagt 9491836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 168 - 304
Target Start/End: Original strand, 33755768 - 33755903
Alignment:
Q  168 taaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaa 267  Q
    |||| ||||||||||||| |||||||||| |||||||||| | ||| ||||||  |  ||| ||| |||| |||| |||||| |||||||| || |||||    
T  33755768 taaagttattgatagttgattagtggatttcatttaagaattttgtgtgagat-ttgtgttggagtgattgaatacttattaggtactactattaaaaaa 33755866  T
Q  268 ttataaataaataatttgtacacgtgagactcattta 304  Q
    | |||||||| |||| | ||||| |||||| ||||||    
T  33755867 taataaataagtaatgtatacacttgagacccattta 33755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 287
Target Start/End: Original strand, 6988184 - 6988322
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||| | || ||||||| |||| |||||||||| |||| ||  || |||||| | |||||    
T  6988184 aaaattaaaatgtgatgatataaaattattgatagttgtttagtaggtttcatttaaaaaat-tgtatgagatactagattaaagtgattaagtttttat 6988282  T
Q  248 taagtactactgttgaaaaattataaataaataatttgta 287  Q
    || |||| ||| ||  ||||||||||| || |||| ||||    
T  6988283 taggtaccactattataaaattataaacaagtaatgtgta 6988322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 1624269 - 1624193
Alignment:
Q  213 tatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtaca 289  Q
    ||||| ||||||||||| |||||||||||||||||||| || || | || ||||||||||| ||||| || ||||||    
T  1624269 tatgaaatgctaggtttaagagattaaatatttattaactattattattaaaaaattataattaaattatgtgtaca 1624193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 32977519 - 32977416
Alignment:
Q  119 ttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatg 216  Q
    ||||||||||||  |||| ||| |||||||||||  | ||||||| || |||||| ||||||||||||| ||||||| | ||||||||||| | ||| ||    
T  32977519 ttaagtgggacctgcactcttttaatgttaaaaaattgaaatgtagtggtataaagttattgatagttgattagtgggtcccatttaagaactttgtgtg 32977420  T
Q  217 agat 220  Q
    ||||    
T  32977419 agat 32977416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 25099050 - 25099128
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagt 191  Q
    ||||| |||||||||| |||||| || ||| |||||||  |||||| |||||||||||| ||||||||||||| |||||    
T  25099050 aatctcaagtgggaccaacacttgtttaatattaaaaaattaaaatataatgatataaaattattgatagttgattagt 25099128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 387697 - 387794
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaat---aaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    |||||||||||||| | ||| ||||||||| |||||||    ||||| |||| ||||||| ||||||||||||| ||||||| |   |||||||||||    
T  387697 aatcttaagtgggatccacattttttaaatattaaaaaattaaaaatataataatataaagttattgatagttgattagtgggtcttatttaagaaat 387794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 18804285 - 18804218
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgc 222  Q
    ||||||||| ||||||| ||||||||||||| |||||   ||||||||| ||||| ||| ||||||||    
T  18804285 aaatgtaataatataaaattattgatagttgattagtaagttccatttatgaaatttgtgtgagatgc 18804218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 22281914 - 22281824
Alignment:
Q  119 ttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaa 207  Q
    |||||||| |||  |||| ||| |||||||||||  | |||| |||||||||||| |||||||| |||| |||||| || |||||||||||    
T  22281914 ttaagtggcacccgcactcttttaatgttaaaaaattgaaatataatgatataaagttattgatggttgattagtgaatcccatttaagaa 22281824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 1947084 - 1947018
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatg 221  Q
    ||||||||||||||||| ||| ||||| ||| ||| ||||| | | ||||||||| |||||||||||    
T  1947084 aaatgtaatgatataaaattaatgataattgattaatggatcctacttaagaaatttgtatgagatg 1947018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 5002479 - 5002414
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||| |||| ||||||| ||||||||||||| ||||||| | ||||||||||| | ||| ||||||    
T  5002479 aaatataataatataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagat 5002414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 42831653 - 42831801
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| |||||  |||||||||||| | | |||||||||||||| |||  ||| | |  ||||    
T  42831653 aaaattaaaatgtaatgatataaaattattgatagttgattaatggatctcatttaagaaatttttgtgagatgctaggttggaggaatttagttcttat 42831752  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgaga 296  Q
    || |||||||| || ||||||||||||| | |||| |||||| ||||||    
T  42831753 taggtactactattaaaaaattataaatgagtaatatgtacatgtgaga 42831801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 124 - 304
Target Start/End: Complemental strand, 52353930 - 52353749
Alignment:
Q  124 tgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatg 221  Q
    ||||||| | ||||||| ||| |||||||  | ||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||| ||| |||||||    
T  52353930 tgggacccatacttttttaatattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgggttctatttaagaaatttgtgtgagatg 52353831  T
Q  222 ctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    || | || ||| |||  | |  |||||| ||||| || || ||||||||||||| | | || |||||||||| ||| ||||||    
T  52353830 ct-gcttggagggatcgagtgcttattaggtactgctattaaaaaattataaattagtgatgtgtacacgtgggacccattta 52353749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 117 - 267
Target Start/End: Complemental strand, 51061770 - 51061618
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgta 214  Q
    |||||||||| ||| | ||||||| ||  |||||||  | ||||||||||||| ||| ||||||||||| | |||| || | ||||||||||||| |||     
T  51061770 tcttaagtggaacccatacttttttaaaattaaaaaattgaaatgtaatgatagaaagttattgatagtagattagcgggtcccatttaagaaatttgtg 51061671  T
Q  215 tgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaa 267  Q
    | | || ||||||| |||||||| | |||||||||||||||||| || |||||    
T  51061670 taaaatactaggttggagagattgagtatttattaagtactactattaaaaaa 51061618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 38601112 - 38601004
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaat-aaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgt 213  Q
    |||||||||||||| | ||| || || ||| |||||||| |||||||||||||||||| ||||||||| ||| |||||||  ||||||||| |||| |||    
T  38601112 aatcttaagtgggatccacaattctttaatattaaaaattaaaatgtaatgatataaagttattgataattgattagtgg-gtccatttaaaaaatttgt 38601014  T
Q  214 atgagatgct 223  Q
     |||||||||    
T  38601013 gtgagatgct 38601004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 47783762 - 47783614
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||||||||||||| ||| | | ||||||||||||| | ||| ||||||   || || ||| |||| | | |||||||| |||    
T  47783762 aaatataatgatataaaattattgatagttgattaataggttccatttaagaactttgtgtgagatttgag-ttggagtgattgagtgtttattaaatac 47783664  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    || | || |||||||||||| |||| || |||||||||||||| ||||||    
T  47783663 tattattaaaaaattataaacaaatgatgtgtacacgtgagacccattta 47783614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 11567037 - 11566958
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaataaaatgtaatgatataaatttattgatagttg 185  Q
    |||||||||| |||||||| |||||||  ||||||||| ||   |||||| ||||||||||||||||| |||||||||||||    
T  11567037 cttaagaccccaatcttaaatgggacc--cactttttatattaaaaaaatgaaatgtaatgatataaagttattgatagttg 11566958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 44665425 - 44665360
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||| |||||||||||| ||||||||||||| |||||| ||| ||||||||| || ||||||||||    
T  44665425 aaatataatgatataaaattattgatagttgattagtgtatttcatttaagagatttgtatgagat 44665360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 49003471 - 49003354
Alignment:
Q  157 atgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtacta 256  Q
    |||||||  |||||| ||||||||||||| || |||| |   ||||||||| | ||| ||||||||| |||| |||||||| |||| |||||| ||| ||    
T  49003471 atgtaattgtataaagttattgatagttgatttgtgggtctaatttaagaattttgtgtgagatgctcggttggagagattgaatacttattaggtatta 49003372  T
Q  257 ctgttgaaaaattataaa 274  Q
    || || ||||||||||||    
T  49003371 ctattaaaaaattataaa 49003354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 51504693 - 51504493
Alignment:
Q  106 taagaccctaatcttaagtgggaccgacactttttaaatgttaaaaat--aaaatgtaatgatataaatttattgatagttggttagtggattccattta 203  Q
    |||||||| |||||||| ||||||| |||||||||||   | ||||||  |||||||  ||||||||| ||||| ||||||| | ||||| | | |||||    
T  51504693 taagaccccaatcttaaatgggacccacactttttaatattaaaaaattgaaaatgttgtgatataaaattattaatagttgataagtgggtcctattta 51504594  T
Q  204 agaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattt 303  Q
    |||||  ||| || |||| | |||| |||  ||| | || ||| || |||||||| || ||||||||||||| | | || | |||||||||||| |||||    
T  51504593 agaaacttgtgtgggatgatgggttggaggaattgagtacttaatacgtactactattaaaaaattataaatgagtgatgtatacacgtgagacccattt 51504494  T
Q  304 a 304  Q
    |    
T  51504493 a 51504493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 11120560 - 11120632
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||| |||||| |||||||||||| ||||||||||||| ||||||||||  ||||||||| | ||| ||||||    
T  11120560 aaaattaaaatataatgatataaagttattgatagttgattagtggattgtatttaagaactttgtgtgagat 11120632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 11449237 - 11449356
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||||||||| || || ||||||| ||| ||  ||  ||||||||||| | | || ||||| |||||||||||||| |||  |||||| ||||    
T  11449237 aaatgtaatgatataaagttttt-atagttgattaatgagttatatttaagaaatttatgtgtgatgccaggtttgagagattgaatgattattaggtac 11449335  T
Q  255 tactgttgaaaaattataaat 275  Q
    || |||| |||||||||||||    
T  11449336 tattgttaaaaaattataaat 11449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 13984053 - 13984172
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||| ||||||||| ||||||||||||| ||||| | |  |||||||||| | ||| |||||| || |||| |||||||| | || ||||||  |||    
T  13984053 aaatgtagtgatataaagttattgatagttgattagtaggtctcatttaagaattttgtgtgagat-ctgggttagagagattgagtacttattagatac 13984151  T
Q  255 tactgttgaaaaattataaat 275  Q
    |||| || |||||||||||||    
T  13984152 tactattaaaaaattataaat 13984172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 11241628 - 11241534
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    |||||||||||| | ||||||||| ||| ||| |||  | |||| |||||||||||| ||||||||||||| ||||||||| || ||||| ||||    
T  11241628 tcttaagtgggatccacacttttttaatattataaaattgaaatataatgatataaagttattgatagttgattagtggataccttttaaaaaat 11241534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 47364380 - 47364479
Alignment:
Q  198 catttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagac 297  Q
    |||||||||||| ||| |||||||||  |||  || |||||| |||||||||  ||||||| || ||||||||||||| | |||| || |||||||||||    
T  47364380 catttaagaaatttgtgtgagatgctcagttgaagtgattaagtatttattatatactactatttaaaaattataaatgagtaatgtgaacacgtgagac 47364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 43822759 - 43822856
Alignment:
Q  125 gggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||||| ||||| ||| ||| |||||||  | ||||||| ||||||||| ||||||||||||| ||||||| | ||||||||||| | ||| ||||||    
T  43822759 gggacctacactcttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagat 43822856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 36297998 - 36298036
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtgg 193  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  36297998 aaatgtaatgatataaaattattgatagttgattagtgg 36298036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 9505632 - 9505556
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagt 191  Q
    |||||||||||||| |||| |||| ||| |||||||  | | ||||||| ||||||| ||||||||||||| |||||    
T  9505632 tcttaagtgggacccacacctttttaatattaaaaaatttatatgtaataatataaagttattgatagttgattagt 9505556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 51263198 - 51263259
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    |||| |||||| |||||| ||||| ||||||||||||| ||||||  || ||||||||||||    
T  51263198 aaaattaaaatataatgacataaagttattgatagttgattagtgtgtttcatttaagaaat 51263259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 155 - 300
Target Start/End: Complemental strand, 43302227 - 43302083
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| |||||||||||| ||||||||||||| ||||||| | ||||||||||| | ||| |||||| |||| || ||| |||| | ||||||||| ||||    
T  43302227 aaatataatgatataaagttattgatagttgattagtgggtcccatttaagaattatgtgtgagat-ctagattggagtgattgagtatttattaggtac 43302129  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactca 300  Q
    |||| || ||||||||||||| | | || |||||| ||||||||||    
T  43302128 tactattaaaaaattataaatgagttatgtgtacaggtgagactca 43302083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 48615404 - 48615259
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||||| ||||||||||||||||| |||||||||| || ||| |||||||| |||||||||| ||| |||| |||| | || |||  ||| ||| |||||    
T  48615404 aaaaatgaaatgtaatgatataaagttattgatagatgattaatggattccgtttaagaaatttgtgtgaggtgctggcttggaggaattgaatgtttat 48615305  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtg 293  Q
    || ||||||  ||| |||||||| |||| | || | ||||||||||    
T  48615304 taggtactaacgttaaaaaattaaaaatgagtattgtgtacacgtg 48615259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 2008562 - 2008707
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    |||||||||||||||  | ||||||| ||| |||||||  | |||||||||| |||||| ||||||||||||| |||  || ||||||||||||||| ||    
T  2008562 aatcttaagtgggacacatacttttttaatattaaaaaattgaaatgtaatggtataaaattattgatagttgattaacgggttccatttaagaaatttg 2008661  T
Q  213 tatgagatgctaggtttgagagattaaata-tttattaagtactact 258  Q
    | |||||| || |||| ||| |||| | || ||||||||||||||||    
T  2008662 tgtgagat-ctgggttagagggattgagtactttattaagtactact 2008707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 4958199 - 4958405
Alignment:
Q  104 cttaagacccta-atcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccat 200  Q
    |||||||||||  ||||||||||||| | |||| |||| ||| |||||||  | | ||||||||||||||| || |||||||||| || |||| || |||    
T  4958199 cttaagaccctccatcttaagtgggatccacacctttttaatattaaaaaattgatatgtaatgatataaagttgttgatagttgatttgtgggtttcat 4958298  T
Q  201 ttaagaaatgtgtatgaga---tgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagac 297  Q
    ||||||||  ||| |||||   || | |||| ||| |||| | | |||||||  ||||||| || ||||||||||||| ||| || |||||||||  |||    
T  4958299 ttaagaaagttgtgtgagatgttgttcggttggagggattgagtgtttattagatactactattaaaaaattataaatgaatgatgtgtacacgtaggac 4958398  T
Q  298 tcattta 304  Q
    |||||||    
T  4958399 tcattta 4958405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 48767318 - 48767212
Alignment:
Q  106 taagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccattt 202  Q
    ||||||||| |||||||||||||||  ||||||||| |||  ||||||  | ||||| ||||||||||| ||||||||||||| ||||||| |  |||||    
T  48767318 taagaccctcaatcttaagtgggactaacacttttttaataataaaaaattgaaatgcaatgatataaagttattgatagttgattagtgggtctcattt 48767219  T
Q  203 aagaaat 209  Q
    |||||||    
T  48767218 aagaaat 48767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 29914512 - 29914362
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||| ||||||| ||||||||||||| |||| |  | ||||||| ||||| ||| ||||||| || ||| ||| |||||| | ||||||| |||     
T  29914512 aaatgtaataatataaagttattgatagttgattagcgagtcccatttatgaaatttgtgtgagatgttaagttggagggattaagtgtttattaggtat 29914413  T
Q  255 tactgtt-gaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| ||  ||||||||||||||| | ||  ||| || |||||||||||||    
T  29914412 tactattataaaaattataaataagtgatgcgtaaacttgagactcattta 29914362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 39853784 - 39853866
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagatt 237  Q
    |||| ||||| |||||| ||||||||||||| ||||||| | ||||||||||||| | | |||||||||||||| ||| ||||    
T  39853784 aaatataatggtataaagttattgatagttgattagtgggtcccatttaagaaatttttgtgagatgctaggttggagcgatt 39853866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 32724206 - 32724315
Alignment:
Q  117 tcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgata---gttggttagtggattccatttaagaaatgt 211  Q
    |||||||||||||| |||| |||| ||| |||||||  | | ||||||||||||||| |||||||||   |||  ||||||| ||||||||||||||| |    
T  32724206 tcttaagtgggacccacacctttttaatattaaaaaattgatatgtaatgatataaagttattgatactagttaattagtgggttccatttaagaaattt 32724305  T
Q  212 gtatgagatg 221  Q
    || |||||||    
T  32724306 gtttgagatg 32724315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 295
Target Start/End: Original strand, 19987120 - 19987314
Alignment:
Q  104 cttaagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccat 200  Q
    ||||||||||| ||||||||||| |||| |||  |||| ||| |||||||  |   |||||||||| |||| ||||||||||| | || || | | ||||    
T  19987120 cttaagaccctcaatcttaagtgagacccacaactttttaatattaaaaaattgttatgtaatgatttaaagttattgatagtcgatttgtaggtcccat 19987219  T
Q  201 ttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgag 295  Q
    ||||||| | ||| ||||||| | |||| ||| ||| |  || |||||| |||||||| || ||||||||||||| ||| || |||||| |||||    
T  19987220 ttaagaactttgtgtgagatgttgggttggagggatcatgtacttattatgtactactattaaaaaattataaatgaatgatgtgtacatgtgag 19987314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 304
Target Start/End: Complemental strand, 36657999 - 36657849
Alignment:
Q  153 taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagt 252  Q
    |||||| ||||| |||||| ||||||||||||| ||||||| | ||||||||||| | ||| |||||| || |||| ||| |||| | |  ||||||  |    
T  36657999 taaaatataatggtataaaattattgatagttgattagtgggtcccatttaagaactttgtgtgagat-ctgggttggagtgattgagtgcttattagat 36657901  T
Q  253 actactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    | |||| || ||||||||||||| |  ||| ||||||| |||||| ||||||    
T  36657900 agtactattaaaaaattataaatgagcaatgtgtacacatgagacccattta 36657849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 46282234 - 46282171
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgct 223  Q
    |||||||||||| ||||||||||||| ||||||| |  |||||||||||| || ||||||||||    
T  46282234 taatgatataaaattattgatagttgattagtgggtctcatttaagaaatttgaatgagatgct 46282171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 6068088 - 6068177
Alignment:
Q  133 cactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagat 220  Q
    |||||||| ||| |||||||  | ||||||||||||| ||| |||||| |||||| ||||||||||  |||||| |||| ||||||||||    
T  6068088 cacttttttaatattaaaaaattgaaatgtaatgatagaaaattattggtagttgattagtggattttatttaaaaaatttgtatgagat 6068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 44441609 - 44441755
Alignment:
Q  158 tgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactac 257  Q
    |||||||||||  | || |||||||||| ||||||| |  |||||||||||| | | ||||||||| |||| |||| ||| | |  |||||| |||||||    
T  44441609 tgtaatgatatccagttgttgatagttgattagtgggtctcatttaagaaatttttgtgagatgctgggttggagatattgagttcttattaggtactac 44441708  T
Q  258 tgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
     ||| ||||||||||||| | | || ||||||  |||||| ||||||    
T  44441709 cgttaaaaaattataaatgagtgatgtgtacatttgagacccattta 44441755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 47841582 - 47841382
Alignment:
Q  106 taagaccctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccattta 203  Q
    |||||||| ||  |||||||||||  |||| |||| ||| |||||||  | | |||| ||| |||||| ||||||||||||| || |||  |  ||||||    
T  47841582 taagaccccaactttaagtgggactcacacctttttaatattaaaaaattgatatgtgatggtataaagttattgatagttgatttgtgagtctcattta 47841483  T
Q  204 agaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattt 303  Q
    |||| | | | ||||||||| |||| ||| |||| | || ||||||| ||||||| ||  |||||||||||| | | || |||||| ||| |||||||||    
T  47841482 agaactttatgtgagatgcttggttggagggattgagtacttattaaatactactattacaaaattataaatgagttatgtgtacatgtgggactcattt 47841383  T
Q  304 a 304  Q
    |    
T  47841382 a 47841382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 36901153 - 36901033
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagatt-aaatattta 246  Q
    |||| |||||| |||||||||||| ||||||||||||| ||||| | |  |||||||||||| | | |||||| || |||| ||| |||| || | ||||    
T  36901153 aaaattaaaatataatgatataaaattattgatagttgattagtaggtctcatttaagaaatttttgtgagatactcggttggagggattgaattcttta 36901054  T
Q  247 ttaagtactactgttgaaaaa 267  Q
    ||| |||||||| || |||||    
T  36901053 ttaggtactactattaaaaaa 36901033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 44441403 - 44441347
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaa 204  Q
    |||| ||||||||| ||||||||| ||||||||||||| ||||||| | ||||||||    
T  44441403 aaaattaaaatgtagtgatataaagttattgatagttgattagtgggtcccatttaa 44441347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 23156356 - 23156266
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaa 239  Q
    |||| ||||||||| ||||||||| ||||||||||||| ||| ||| |  |||||||||| | ||| |||||| ||||||| ||| ||||||    
T  23156356 aaaattaaaatgtagtgatataaagttattgatagttgattaatgggtctcatttaagaactttgtgtgagat-ctaggttggagggattaa 23156266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 4874982 - 4874945
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttg 185  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  4874982 aaaattaaaatgtaatgatataaagttattgatagttg 4874945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 9429729 - 9429802
Alignment:
Q  231 agagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||||| ||||||||||| |||||||  || ||||||||||||| |||  | ||||||||||| || ||||||    
T  9429729 agagattgaatatttattaggtactacaattaaaaaattataaatgaatgttgtgtacacgtgacacccattta 9429802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 38223948 - 38224020
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttg 185  Q
    |||||||||||||||| |||| |||| ||| |||||||  | | ||||||||||||||  |||||||||||||    
T  38223948 aatcttaagtgggacccacacctttttaatattaaaaaatttatatgtaatgatataatgttattgatagttg 38224020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 6710987 - 6710832
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| | ||||| ||||||||| | ||| |||||| ||||||| ||| || | | |  ||||    
T  6710987 aaaattaaaatgtaatgatataaagttattgatagttgattaattgattctatttaagaactttgtgtgagat-ctaggttggagtgactgagtgcttat 6710889  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||  ||||||| || ||||||||||||| | | || |||||||||||||| ||||||    
T  6710888 tagatactactattaaaaaattataaatgagtgatctgtacacgtgagacccattta 6710832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 40999639 - 40999747
Alignment:
Q  104 cttaagaccct-aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccat 200  Q
    ||||||||||| |||||||||||||||| |||||| || ||| ||||||   | |||| |||||||||||| |||||||| |||| ||||||| ||||||    
T  40999639 cttaagaccctcaatcttaagtgggacccacacttgtttaatattaaaagattgaaatataatgatataaagttattgatggttgattagtgggttccat 40999738  T
Q  201 ttaagaaat 209  Q
    |||||||||    
T  40999739 ttaagaaat 40999747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 296
Target Start/End: Original strand, 34375041 - 34375203
Alignment:
Q  133 cactttttaaatgttaaaaata-aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttga 231  Q
    |||||||| ||| ||||||||  ||||||||| ||||||| ||||||||||||| ||| ||| | |||||||||  || | | ||||||  |||||| ||    
T  34375041 cacttttttaatattaaaaattgaaatgtaataatataaagttattgatagttgattaatgggtcccatttaag--atttttttgagatcttaggttgga 34375138  T
Q  232 gagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgaga 296  Q
    | |||| |||  |||||| |||||||| || ||||||||||||||| | || |||||| ||||||    
T  34375139 gggattgaattcttattaggtactactattaaaaaattataaataagtgatgtgtacatgtgaga 34375203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 65554 - 65383
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaa-atgttaaaaataaaatgtaatgatataaatttattgatagttggttagtggattccattt 202  Q
    |||||||| ||||||||||  |||||  ||||||||||| ||   |||| | ||||||||||||| ||| ||||||||||||| ||| ||| |  |||||    
T  65554 cttaagactctaatcttaaacgggacttacactttttaatataaaaaaattgaaatgtaatgatacaaacttattgatagttgattaatggttctcattt 65455  T
Q  203 aagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaa 274  Q
    || |||| ||| ||||||| | | || ||| |||||| | ||||||| |||||||  || ||||||||||||    
T  65454 aataaatttgtgtgagatgttggattggagggattaagtgtttattatgtactacaattaaaaaattataaa 65383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 5038719 - 5038852
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccat--ttaagaaatgtgtatgagatgctaggtttgagagattaaatattt 245  Q
    |||| |||||| |||| ||||||| ||||||||||||| ||||||| |  ||   ||||||||| ||| ||||||||  |||| |||||||| |||  ||    
T  5038719 aaaattaaaatataataatataaaattattgatagttgattagtgggtcacacaattaagaaatttgtgtgagatgccgggttggagagattgaatgctt 5038818  T
Q  246 attaagtactactgttgaaaaattataaataaat 279  Q
    ||||| ||||| | || |||||||||||||||||    
T  5038819 attaattactattattaaaaaattataaataaat 5038852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 339
Target Start/End: Original strand, 11921964 - 11922144
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactg 259  Q
    |||||||||||| |||||| |||||| ||||| | | ||||||||||||| ||| ||||||  | |||| |||  ||| | |  || ||| ||||||||     
T  11921964 taatgatataaagttattggtagttgattagtaggtcccatttaagaaatttgtgtgagatt-tgggttggaggaattgagtgctttttaggtactacta 11922062  T
Q  260 ttgaaaaattataaataaataatttgtacacgtgagactcatttacgtaa--aaaagtgaatgtcttcgttgtagatgctct 339  Q
    || ||||||||||||| | |||| |||||||||||||| |||||| ||||  |||| ||| ||||| | |||| ||||||||    
T  11922063 ttaaaaaattataaatgagtaatgtgtacacgtgagacccatttaagtaattaaaaatgagtgtctccattgtggatgctct 11922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 44887349 - 44887267
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagatt 237  Q
    |||| |||||||||||||||||||||||||| ||| |||||  ||||||| |||| ||| ||||||| | |||||||| ||||    
T  44887349 aaatataatgatataaatttattgatagttgattattggatctcatttaaaaaatttgtttgagatgttgggtttgagggatt 44887267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 3668846 - 3669002
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||| ||||||||||||| |||| |||||||  ||||||| |   ||||||||||| ||| ||| ||  |  ||| ||  |||| | || ||||    
T  3668846 aaaattaaaacgtaatgatataaaattatcgatagttaattagtggttcttatttaagaaatttgtgtgatatattgagttggacggattgagtacttat 3668945  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||| ||||||| || ||||||||||||| | |||| | |||||||||||||||||||    
T  3668946 taattactactattaaaaaattataaattagtaatatatacacgtgagactcattta 3669002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 32887753 - 32887670
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggatt 196  Q
    |||||||| ||||||| ||||| ||| ||| |||||||  ||||||||||| ||||||| ||||| ||||||| ||||||||||    
T  32887753 aatcttaattgggacccacactcttttaatattaaaaaattaaaatgtaataatataaagttatttatagttgattagtggatt 32887670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 36887678 - 36887626
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaa 207  Q
    ||||| ||||||||||||||||||||||||| |||||||||  ||||||||||    
T  36887678 aaatgcaatgatataaatttattgatagttgattagtggatctcatttaagaa 36887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 304
Target Start/End: Original strand, 9583157 - 9583305
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    |||| ||||||| |||| ||||||| | ||| ||||||| | | ||||||||| | ||| |||||| ||  ||||||| |||| | |  ||||||  |||    
T  9583157 aaatataatgatgtaaagttattgacaattgattagtgggtccaatttaagaactttgtgtgagat-ctgagtttgagtgattgagtgcttattagatac 9583255  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||| || ||||||||||||||| | ||  ||||||||||||||||||||    
T  9583256 tactattaaaaaattataaataagtgatgcgtacacgtgagactcattta 9583305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 16118016 - 16117872
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactg 259  Q
    |||||||||||| ||||||||||||| || |||||| ||||||| | ||| ||| ||||||||  |||| |||  ||| | |  |||||| ||| |  |     
T  16118016 taatgatataaagttattgatagttgatttgtggataccatttatggaatatgtgtgagatgcatggttggaggaattgagtgcttattaggtattgata 16117917  T
Q  260 ttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    || ||||||||||||| | | || |||||||||||||| ||||||    
T  16117916 ttaaaaaattataaatgagtgatatgtacacgtgagacccattta 16117872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 34234858 - 34234964
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    |||||||||| | ||| ||||||||||| | |||||||  | ||||||||||||||||| ||||||||| ||| ||||||| |   |||||| |||| ||    
T  34234858 aatcttaagtagaacccacactttttaa-tattaaaaaattgaaatgtaatgatataaagttattgataattgattagtgggtctaatttaataaatttg 34234956  T
Q  213 tatgagat 220  Q
    ||||||||    
T  34234957 tatgagat 34234964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 18970011 - 18970114
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||| ||||||| ||||| ||||||| ||||||  || |||||||||||| ||| ||||| |||  |||  ||||||| | | ||||||| ||||    
T  18970011 aaatgtaattatataaagttattaatagttgattagtgagtttcatttaagaaatttgtgtgagaggctgagttgaagagattgagtgtttattaggtac 18970110  T
Q  255 tact 258  Q
    ||||    
T  18970111 tact 18970114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 15269247 - 15269360
Alignment:
Q  190 gtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtaca 289  Q
    |||||| |||||||| |||| ||||||| ||| |  ||| ||| |||| |||| |||||| | |||||| || ||||||||||||| | |||| ||||||    
T  15269247 gtggatcccatttaa-aaatttgtatgatatgatgtgttggagggattgaatacttattaggcactactattaaaaaattataaatgagtaatgtgtaca 15269345  T
Q  290 cgtgagactcattta 304  Q
     ||||||| ||||||    
T  15269346 tgtgagacccattta 15269360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 26312486 - 26312623
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtac 254  Q
    ||||||||||| ||||| |||||| |||||| ||||||| ||| |||||| |||| ||| |||||| ||  ||| |||  ||| | |  |||||| ||||    
T  26312486 aaatgtaatgacataaagttattggtagttgattagtgggttctatttaataaatttgtgtgagat-ctgagttggaggaattgagtgcttattaggtac 26312584  T
Q  255 tactgttgaaaaattataaataaataatttgtacacgtg 293  Q
    |||| || ||||||||||||| | | || ||||||||||    
T  26312585 tactattaaaaaattataaatgagtgatgtgtacacgtg 26312623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 13022833 - 13022796
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtg 192  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  13022833 aaatgtaataatataaatttattgatagttgattagtg 13022796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 28857137 - 28857242
Alignment:
Q  199 atttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagact 298  Q
    ||||||||||| ||| | ||||||| |||| ||  ||||||||  |||||||||| ||||  | ||||||||||||||||| || |||| | || ||||     
T  28857137 atttaagaaatttgtgtaagatgctgggttggaaggattaaattcttattaagtattactactaaaaaattataaataaattatgtgtataagtaagacc 28857236  T
Q  299 cattta 304  Q
    ||||||    
T  28857237 cattta 28857242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 31050122 - 31050069
Alignment:
Q  251 gtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    |||||||| || ||||||||||||||| | || |||||| ||||||||||||||    
T  31050122 gtactactattaaaaaattataaataagtgatgtgtacatgtgagactcattta 31050069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 31050221 - 31050160
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaat 209  Q
    |||||| ||||||||||||||| | |||||||||  |  |||||||||||| ||||||||||    
T  31050221 aaaaattaaatgtaatgatatagagttattgatatataattagtggattccgtttaagaaat 31050160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 39368749 - 39368798
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaa 204  Q
    ||||||||  ||||||| ||||||||||||| ||| ||||||||||||||    
T  39368749 aaatgtaaaaatataaaattattgatagttgattaatggattccatttaa 39368798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 104 - 304
Target Start/End: Complemental strand, 41521024 - 41520822
Alignment:
Q  104 cttaagaccctaatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatt 201  Q
    |||||||||  |||||||||||||||| |||| |||| |||  ||||||  | | |||||||| |||||| ||||||||||||  || |||| | |||||    
T  41521024 cttaagacctcaatcttaagtgggacccacacctttttaatagtaaaaaattgatatgtaatggtataaagttattgatagttaatttgtgggtcccatt 41520925  T
Q  202 taagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagactcat 301  Q
    || ||| | ||| ||||||||| |||| ||| |||| | |  |||||| |||| ||| || ||||||||||||||| | || ||||||||||| || |||    
T  41520924 taggaactttgtgtgagatgctgggttggagggattgagttcttattaggtaccactattaaaaaattataaataagtgatgtgtacacgtgaaacccat 41520825  T
Q  302 tta 304  Q
    |||    
T  41520824 tta 41520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 2375556 - 2375684
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| |||||| |||| ||||||| ||||||||||||| ||||||| | ||||||||||| | ||| ||||||   ||| ||||| |||| ||| |||||    
T  2375556 aaaattaaaatataattatataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagatttgagg-ttgagtgattgaatgtttat 2375654  T
Q  248 taagtactactgttgaaaaattataaataa 277  Q
    || |||||||| || |||||||||||||||    
T  2375655 taggtactactattaaaaaattataaataa 2375684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 42551197 - 42551051
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtg-gattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatattta 246  Q
    |||| ||||||||||| ||||||| |||||||| |||| ||| |  | ||  ||||||||||| ||| |||||||||||||||||| |||| | |  |||    
T  42551197 aaaattaaaatgtaatcatataaaattattgatggttgattactaagtttaaatttaagaaatttgtgtgagatgctaggtttgagggattgattgctta 42551098  T
Q  247 ttaagtactactgttgaaaaattataaataaataatttgtacacgtg 293  Q
    ||| |||||| | || ||||||||||||| ||| || ||||||||||    
T  42551097 ttatgtactattattaaaaaattataaatgaatgatgtgtacacgtg 42551051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 8228774 - 8228922
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||||| ||||||||||||||| | ||||||||||||| || ||||||   |||| | |||| ||||||||||| |  ||| ||| |||| | |||||||    
T  8228774 aaaaatgaaatgtaatgatatacaattattgatagttgattcgtggatcttattttaaaaatctgtatgagatgatgtgttggagggattgagtatttat 8228873  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgaga 296  Q
    ||  ||||| |||| ||||||||||||| | |  |||||||| ||||||    
T  8228874 tagatactattgttaaaaaattataaatgattggtttgtacatgtgaga 8228922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 15468273 - 15468163
Alignment:
Q  115 aatcttaagtgggaccgacactttttaaatgttaaaaa--taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtg 212  Q
    ||||||||| || ||| ||||| ||| ||| |||||||  | |||| |||||||||||| |||||||||  || ||||||||| ||||||||||||| ||    
T  15468273 aatcttaagcggtacccacactcttttaatattaaaaaattgaaatttaatgatataaaattattgataaatgattagtggatcccatttaagaaatttg 15468174  T
Q  213 tatgagatgct 223  Q
    | |||||||||    
T  15468173 tgtgagatgct 15468163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 35463332 - 35463217
Alignment:
Q  160 taatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgaga-gattaaatatttattaagtactact 258  Q
    |||||||||||| ||||||||||||| ||  || ||| |||||||||||| ||| ||||||| | ||||||| | |||| | || |||||| ||||||||    
T  35463332 taatgatataaaattattgatagttgatttatgaatttcatttaagaaatttgtgtgagatgttgggtttgaaaggattgagtacttattaggtactact 35463233  T
Q  259 gttgaaaaattataaa 274  Q
     || ||||||||||||    
T  35463232 attaaaaaattataaa 35463217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 1666872 - 1666743
Alignment:
Q  164 gatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttga 263  Q
    |||||||| ||||||||||||| ||| | |||||||||||||||||  || | | ||||| |||| |||||||| | |  |||| ||||||||  ||| |    
T  1666872 gatataaagttattgatagttgattattagattccatttaagaaattcgtgtaaaatgctgggttggagagattgagtgcttataaagtactagagtt-a 1666774  T
Q  264 aaaattataaataaataatttgtacacgtga 294  Q
    |||||||||| ||||| || |||||||||||    
T  1666773 aaaattataagtaaatgatgtgtacacgtga 1666743  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 304
Target Start/End: Original strand, 29558345 - 29558500
Alignment:
Q  148 aaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgagagattaaatatttat 247  Q
    |||| ||||||||||||||||||| ||||||||||||| ||| | |||   ||||||||||| ||| |||||||||  |||  ||||||||| |  ||||    
T  29558345 aaaattaaaatgtaatgatataaaattattgatagttgattattagatcttatttaagaaatttgtgtgagatgctgagttgaagagattaagtgcttat 29558444  T
Q  248 taagtactactgttgaaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    | ||||||| | || ||||||| ||||| | | || ||||||| || || |||||||    
T  29558445 t-agtactattattaaaaaattgtaaatgagtgatgtgtacacatgtgattcattta 29558500  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 11200453 - 11200599
Alignment:
Q  199 atttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagact 298  Q
    ||||||||||| ||| ||| ||||| |||| |||| ||| |||| |||||| ||| || | || ||||||||||||| | | || ||||| |||||| ||    
T  11200453 atttaagaaatttgtgtgaaatgctgggttggagaaatttaatacttattaggtattattattaaaaaattataaatgagtgatgtgtacgcgtgagtct 11200552  T
Q  299 cattta--cgtaaaaaagtgaatgtcttcgttgtagatgctctaaga 343  Q
    ||||||  | |  |||| ||| ||||||| ||||||||| |||||||    
T  11200553 catttaagcatccaaaaatgagtgtcttcattgtagatgttctaaga 11200599  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 279
Target Start/End: Original strand, 4432323 - 4432469
Alignment:
Q  133 cactttttaaatgttaaaaataaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgagatgctaggtttgag 232  Q
    |||| ||| ||| |||||| | ||||||||| ||||||| |||||||||| || | | || ||  |||||||||||| | | |||||||||  |||| ||    
T  4432323 cactcttttaatattaaaattgaaatgtaattatataaagttattgatagctgatcaatgaatctcatttaagaaatttttgtgagatgctgcgtttaag 4432422  T
Q  233 agattaaatatttattaagtactactgttgaaaaattataaataaat 279  Q
     |||| |||  || ||||||| |||| || ||| |||||||||||||    
T  4432423 ggattgaattctttttaagtattactattaaaatattataaataaat 4432469  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 12593139 - 12593205
Alignment:
Q  153 taaaatgtaatgatataaatttattgatagttggttagtggattccatttaagaaatgtgtatgaga 219  Q
    ||||||||||||||||||| ||||||||| ||| ||||| | |  |||||||||||| ||| |||||    
T  12593139 taaaatgtaatgatataaagttattgataattgattagttggtctcatttaagaaatttgtttgaga 12593205  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 13486599 - 13486648
Alignment:
Q  155 aaatgtaatgatataaatttattgatagttggttagtggattccatttaa 204  Q
    |||| |||||||||||| |||||||||| || ||||||| ||||||||||    
T  13486599 aaatataatgatataaagttattgatagctgattagtgggttccatttaa 13486648  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 31046361 - 31046320
Alignment:
Q  263 aaaaattataaataaataatttgtacacgtgagactcattta 304  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  31046361 aaaaattataaataaataatttgtacatgtgaagctcattta 31046320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 63609 - 63707
Alignment:
Q  199 atttaagaaatgtgtatgagatgctaggtttgagagattaaatatttattaagtactactgttgaaaaattataaataaataatttgtacacgtgagac 297  Q
    ||||||||||| ||| ||||||| | |||| |||||||| | |  |||||| |||||||| || ||||||||||||| | | |  ||||||||||||||    
T  63609 atttaagaaatatgtgtgagatgatgggttagagagattgagtccttattaggtactactattaaaaaattataaattagtgacatgtacacgtgagac 63707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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