View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_low_4 (Length: 508)
Name: NF11126_low_4
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 34867158 - 34866679
Alignment:
| Q |
18 |
cttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggcaacgcctaccctacttcactgatcttgttgaagggataaatt |
117 |
Q |
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| T |
34867158 |
cttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggcaacgcctaccctacttcactgatcctgttgaagggataaatt |
34867059 |
T |
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| Q |
118 |
tccttaatgattggttttcttggaacttgtatatgcagaaagttagatatatagtggaaattttacttttgtttgaggtactgtttatggaaattaagca |
217 |
Q |
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| T |
34867058 |
tccttaatgattggttttcttggaacttgtatatgcagaaagttagatatatattggaaattttacttttgtttgaggtactgtttatggaaattaagca |
34866959 |
T |
|
| Q |
218 |
ctaacgtaatctataatgaaagaggtgatgtggttaaactgcttttatataagttgtaaattgtttctgcaagcttattgtggaggttattgaaataagt |
317 |
Q |
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| T |
34866958 |
ctaacgtaatctataatgaaagaggtgttgtggttaaactgcttttatataagttgtaaattgtttctgcaagcttattgtggaggttattgaaataagt |
34866859 |
T |
|
| Q |
318 |
tataaacaacttgttgagtgtctcgcaaaatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtag |
417 |
Q |
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| T |
34866858 |
taaaaacaacttgttgagtgtctcacaaaatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtag |
34866759 |
T |
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| Q |
418 |
ggttgagttagagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttct |
497 |
Q |
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| T |
34866758 |
ggttgagttagagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttct |
34866679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 227 - 496
Target Start/End: Original strand, 51857107 - 51857375
Alignment:
| Q |
227 |
tctataatgaaagaggtgatgtggttaaactgcttttatataagttgtaaattgtttctgcaagcttattgtggaggttattgaaataagttataaacaa |
326 |
Q |
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||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
51857107 |
tctataatgaaagaggtgatgcagttgaactgcttttttataagttgtaaattgtttctgcaagcttattgtggaggttactgaaataaggtaaaaacaa |
51857206 |
T |
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| Q |
327 |
cttgttgagtgtctcgcaaaatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagtt |
426 |
Q |
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| T |
51857207 |
cttgttgagagtcccacaacatatagtaatatggccaaagtag-gcttagaaggtggtcgatatccttcactttacaaattgattttgtagggttgagtt |
51857305 |
T |
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| Q |
427 |
agagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttc |
496 |
Q |
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| T |
51857306 |
agagccaatccaaattttaagacagcttttaaacatgttataagctatttttataagttctgtcatgttc |
51857375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 37579956 - 37579900
Alignment:
| Q |
386 |
gatatccttcacattactaactgattttgtagggttgagttagagccaatccaaatt |
442 |
Q |
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|||||| ||||| |||| | |||||||||||||||||||||||| | |||| ||||| |
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| T |
37579956 |
gatatctttcaccttacaagctgattttgtagggttgagttagaccaaatctaaatt |
37579900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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