View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11126_low_5 (Length: 494)
Name: NF11126_low_5
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11126_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 31836627 - 31836159
Alignment:
| Q |
13 |
cagagagaaagagattagggaagcttgagaacttttattaatttctcacaaatactacatagtgcaactagtacttatttatatgaactgctatgtaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836627 |
cagagagaaagagattagggaagcttgagaacttttattaatttctcacacacactacatagtgcaactagtacttatttatatgaactgctatgtaaca |
31836528 |
T |
|
| Q |
113 |
aattatcagttacactaactgaattactaactgtaaaaactgaattggtttcgtattacttacaacaccatcccttaatacaaaatcacaacaaaaatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836527 |
aattatcagttacactaactgaattactaactgtaaaaactgaattggtttcgtattacttacaacaccatcccttaatacaaaatcacaacaaaaatga |
31836428 |
T |
|
| Q |
213 |
tacaactccaagttctcttcttagccttgcaaactggtcagtcttcaaagcctttgtcaaaacatcagcaacttgcttattggcaggacagtaagctact |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31836427 |
tacaactccaagttctcttcttagccttgcaaactggtcagtcttcaaagcctttgtcaaaacataagcaacttgcttattggcaggacagtaagctact |
31836328 |
T |
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| Q |
313 |
gtcaattcctacttctaaacttgcactctcagaaaatggaacctagtttcaatatgtttgctcctatcatgagatacaggattcttcgctaaatttatcg |
412 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836327 |
gtcaattcctacttctgaacttgcactctcagaaaatggaacctagtttcaatatgtttgctcctatcatgagatacaggattcttcgctaaatttatcg |
31836228 |
T |
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| Q |
413 |
ttgacttgttatcaaataggagcttttataggccttttcacttcaatcttcaattcctgcatcagtgaa |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31836227 |
ttgacttgttatcaaataggagcttttataggccttttcacttcaatcttcaattcctgcatcagtgaa |
31836159 |
T |
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