View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11126_low_6 (Length: 470)

Name: NF11126_low_6
Description: NF11126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11126_low_6
NF11126_low_6
[»] chr6 (3 HSPs)
chr6 (1-455)||(17591601-17592048)
chr6 (34-128)||(17698292-17698384)
chr6 (33-123)||(17737267-17737355)
[»] chr5 (1 HSPs)
chr5 (167-231)||(11970360-11970424)
[»] chr7 (3 HSPs)
chr7 (167-231)||(44057542-44057606)
chr7 (185-231)||(39136029-39136075)
chr7 (192-231)||(4088562-4088601)
[»] chr8 (2 HSPs)
chr8 (232-309)||(33023785-33023861)
chr8 (170-231)||(41178185-41178246)
[»] chr2 (2 HSPs)
chr2 (190-231)||(44194926-44194967)
chr2 (192-231)||(4603219-4603258)
[»] scaffold0669 (1 HSPs)
scaffold0669 (36-72)||(3140-3176)
[»] chr3 (2 HSPs)
chr3 (163-231)||(54918248-54918316)
chr3 (167-219)||(46160846-46160898)
[»] chr1 (2 HSPs)
chr1 (167-231)||(6596644-6596708)
chr1 (194-231)||(18428364-18428401)
[»] chr4 (1 HSPs)
chr4 (168-231)||(1019033-1019096)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 17592048 - 17591601
Alignment:
Q  1 ttagcataggtgtttgatatcgagtacttctcaatcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17592048 ttagcataggtgtttgatatcgagtacttctcaatcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgta 17591949  T
Q  101 agcgataattgcattgttgtttggtttcnnnnnnnnnnnnnnnaaatgtaaaaatctactaactctgtttcaaattgagtgtcatttatgatttttacac 200  Q
    ||||| ||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17591948 agcgagaattgcattgttgtttggtttctttttttctttttttaaatgtaaaaatctactaactctgtttcaaattgagtgtcgtttatgatttttacac 17591849  T
Q  201 acaaattaagtaatgtaataataatgtcaaagagaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaatt 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17591848 acaaattaagtaatgtaataataatgtcaaacagaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaatt 17591749  T
Q  301 ataatgcaaagagtatggaataaggtacatcgaagtcaaaattagtgaaattataaagcctgcaagagagaaattagtattgatccaaaggcttctctgt 400  Q
    ||||| ||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  17591748 ataatacaaagagtatggaataaggtac----aagtcaaaaatagtgaaattataaagcctgcaagagagaa---agtattgatccaaaggcttctctgt 17591656  T
Q  401 tagaagctgttaccatttgtttgtagaggaatttgagactgcagatctgatgtcc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17591655 tagaagctgttaccatttgtttgtagaggaatttgagactgcagatcagatgtcc 17591601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 17698384 - 17698292
Alignment:
Q  34 atcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgca-ttgttgtttggtttc 128  Q
    ||||||||||||||||||||| || |||||||||||||||| | ||| ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  17698384 atcgttgtattaattgtactccttcgttttctatataatat-tgtttctcattcaaaataaaatgtaa--gataattgcatttgttgtttggtttc 17698292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 17737355 - 17737267
Alignment:
Q  33 aatcgttgtattaattgtactcttttgttttctatataatatatatttgtcattcaaaataaaatgtaagcgataattgcattgttgtttg 123  Q
    ||||| ||| |||||||||||  || |||||| | |||||||| |||||||||| |||| ||||| |||  | ||||||||||||||||||    
T  17737355 aatcgctgtgttaattgtactacttggttttcgacataatatacatttgtcatttaaaagaaaatataa--gttaattgcattgttgtttg 17737267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 11970424 - 11970360
Alignment:
Q  167 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  11970424 gttttaaaatgagtgtcatttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 11970360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 44057542 - 44057606
Alignment:
Q  167 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||||||| |||||||  |||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  44057542 gtttcaaaatgagtgttgtttaagatttttacacacaaattaagaaatgtaataatgatgtcaaa 44057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 39136029 - 39136075
Alignment:
Q  185 tttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||    
T  39136029 tttaagatttttacacataaattaagaaatgtaataataatgtcaaa 39136075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 4088562 - 4088601
Alignment:
Q  192 tttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  4088562 tttttacacacaaattaagaaatgtaataatgatgtcaaa 4088601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 33023785 - 33023861
Alignment:
Q  232 gagaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataatgcaa 309  Q
    ||||| |||||||||| ||||||| | |||||||||||||||||| |||||| ||| |||| ||| ||||||||||||    
T  33023785 gagaagttatcatgtg-ctaaatccactatataaattgcaaccagaatttcagttgctacatatatattataatgcaa 33023861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 41178185 - 41178246
Alignment:
Q  170 tcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    ||||| || ||||| |||| | ||||||||||||||||||| ||||||||||| ||||||||    
T  41178185 tcaaaatgggtgtcgtttaaggtttttacacacaaattaagaaatgtaataatgatgtcaaa 41178246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 44194926 - 44194967
Alignment:
Q  190 gatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  44194926 gatttttacacacaaattaagaaatgtaataatgatgtcaaa 44194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 4603219 - 4603258
Alignment:
Q  192 tttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  4603219 tttttatacacaaattaagaaatgtaataataatgtcaaa 4603258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 3140 - 3176
Alignment:
Q  36 cgttgtattaattgtactcttttgttttctatataat 72  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3140 cgttgtattaattgtactcatttgttttctatataat 3176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 54918316 - 54918248
Alignment:
Q  163 ctctgtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||||||||||| ||||| || |||| | |||||||||| |||||||| ||| ||||||| ||||||||    
T  54918316 ctctgtttcaaaatgagtatcgtttaaggtttttacacataaattaagaaatttaataatgatgtcaaa 54918248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 46160898 - 46160846
Alignment:
Q  167 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaat 219  Q
    |||||||| ||| |||| |||| | ||||||||||||||||||| ||||||||    
T  46160898 gtttcaaaatgaatgtcctttaaggtttttacacacaaattaagaaatgtaat 46160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 6596708 - 6596644
Alignment:
Q  167 gtttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    |||||||| |||||||  |||| |||||||| |||||||||||| |||||| || ||||||||||    
T  6596708 gtttcaaaatgagtgttgtttaagatttttagacacaaattaagaaatgtactagtaatgtcaaa 6596644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 18428364 - 18428401
Alignment:
Q  194 tttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  18428364 tttacacacaaattaagaaatgtaataatgatgtcaaa 18428401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 1019033 - 1019096
Alignment:
Q  168 tttcaaattgagtgtcatttatgatttttacacacaaattaagtaatgtaataataatgtcaaa 231  Q
    ||||||| |||||||| |||| | |||||||||||||||| || |||||||||||  |||||||    
T  1019033 tttcaaaatgagtgtcgtttaaggtttttacacacaaatttagaaatgtaataatggtgtcaaa 1019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University