View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_high_12 (Length: 477)
Name: NF11127_high_12
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 35075587 - 35076032
Alignment:
| Q |
19 |
gataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatcaattctactatatagtttttgctatattatatgtcaacaatataaatgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075587 |
gataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatcaattctactatatagtttttgctatattatatgtcaacaatataaatgt |
35075686 |
T |
|
| Q |
119 |
ttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtggtgttttttgttatatgcctataaaaaatagttgtgcaaggaca |
218 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35075687 |
ttaaaatagtgttgttttttacttcaatctatatatcagtttgaaaataaatagtggtgttttttgttatctgcctataaaaaatagttgtgcaaggaca |
35075786 |
T |
|
| Q |
219 |
ttgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagttttttagtaaccgagtttctgtcatattgttttgctggtgataaaa |
318 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075787 |
ttgaaaataccaacaattttgcatatttcattggaatgtattgtgctctcaagttttttagtaaccgagtttctgtcatattgttttgctggtgataaaa |
35075886 |
T |
|
| Q |
319 |
tgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075887 |
tgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttctc |
35075986 |
T |
|
| Q |
419 |
gcttttgtgtgttgtctttaatctctataccttttagtgtgatgtc |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35075987 |
acttttgtgtgttgtctttaatctctataccttttagtgtggtgtc |
35076032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Original strand, 35101701 - 35102140
Alignment:
| Q |
20 |
ataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatcaattcta--ctatatagtttttgctatattatatgtcaacaatataaatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
35101701 |
ataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatcaattctatactatatattttttgctatattatatgtcaacaatataaatg |
35101800 |
T |
|
| Q |
118 |
tttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtggtgttttttgttatatgcctataaaaaatagttgtgcaaggac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
35101801 |
tttaaaatagtgttgttttttgcttcaatctatatatcaatttcaaaataaatagtggtgttttttgttatctgcctatgaaaaatagttgtgcaaggac |
35101900 |
T |
|
| Q |
218 |
attgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagttttttagtaaccgagtttctgtcatattgttttgctggtgataaa |
317 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35101901 |
attgaaaataccaacaattttgcatatttcattggaatgtattgcgctctcaagttttttagtaaccgagtttctgtcatattgttttgctggttataaa |
35102000 |
T |
|
| Q |
318 |
atgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtagattttgttgcatgttaataagtgtaggttgtgtggttgtttct |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
35102001 |
atgaatttgcattgtgcatctgcactgcatgggtgttaatttaaataaatattgtagattttgttgcatgttaataagtgtagggtgtgtggctgtttct |
35102100 |
T |
|
| Q |
418 |
cgcttttgtgtgttgtctttaatctctataccttttagtg |
457 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35102101 |
cgcttttgtgtgctgtctttaatctctataccttttagtg |
35102140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 23095700 - 23095642
Alignment:
| Q |
116 |
tgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtg |
174 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23095700 |
tgtttaaaatagtactgttttttgcttcaatctatatatcagtttgaaaataaatagtg |
23095642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 13763394 - 13763485
Alignment:
| Q |
85 |
tttttgctatattatatgtcaacaatataaatgtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtggt |
176 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||||||| | |||||||||||||||||| |
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|
| T |
13763394 |
tttttgttgtattatatgtcaacaatataaatggttaaaatagcagtgttgtttgctttaatctatatataaaattgaaaataaatagtggt |
13763485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 23095642 - 23095587
Alignment:
| Q |
215 |
gacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaa |
270 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
23095642 |
gacattgaaaataccaacaattttgcatatttcattgaaatgtattgtgctctcaa |
23095587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 37588936 - 37589296
Alignment:
| Q |
19 |
gataaaaaagaatgaaccctaattgtttgtcaaaggaatttcagagatatcaattcta--ctatatagtttttgctatattatatgtcaacaatataaat |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
37588936 |
gataaaaaagaatgaaccctaattatttgtcaaaggaatttcagagatatcaattctatactatatgttttttgctatattatatgtcaacaataaaaat |
37589035 |
T |
|
| Q |
117 |
gtttaaaatagtgttgttttttgcttcaatctatatatcagtttgaaaataaatagtggtgtttt--ttgttatatgcctataaaaaatagttgtgcaag |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |
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|
| T |
37589036 |
gtttaaaatagtggtgttttttgcttcaatctatatattagtttgaaaataaatagtggtgttttttttgttatctgcctatgaaaaatagttgtgcaag |
37589135 |
T |
|
| Q |
215 |
gacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagttttttagtaaccgagtttctgtcatattgttttgctggtgat |
314 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
37589136 |
gacattgaaaataccaacaattttgtatattttatttgaatgtattgtgccctcaagttttttagtaaccaagtttctatcatattgttttgctggtgat |
37589235 |
T |
|
| Q |
315 |
aaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtaga |
375 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
37589236 |
aaaatgaatttgcactgtgcatctgcactgcatgggtgttaagttaaataaatattgtaga |
37589296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 180 - 375
Target Start/End: Complemental strand, 16679334 - 16679139
Alignment:
| Q |
180 |
ttttgttatatgcctataaaaaatagttgtgcaaggacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagttttttag |
279 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
16679334 |
ttttgttatctgcctatgaataatagttgtgcaaggacattgaaaataccaacaattttgcatatttcattggaatgtactgtgctctcaagtattttag |
16679235 |
T |
|
| Q |
280 |
taaccgagtttctgtcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaatataaataaatattgtaga |
375 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
16679234 |
taactgagtttctgtcatactattttgctggtgataaaatgaatttgcagtgtgcatttgcactgcatgggtgttaagttaaataaatagtgtaga |
16679139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 49696796 - 49696675
Alignment:
| Q |
294 |
tcatattgttttgctggtgataaaatgaatttgcattgtgcatctgcactacatgggtgttaa----ta---taaataaatattgtagattttgttgcat |
386 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||||||||| |||||||||||| || |||||||||| |||| |||||||||||| |
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|
| T |
49696796 |
tcatattgttttgctgatgataaaatgagtttgcactgtgcatctgcactgcatgggtgttaactgttaagttaaataaataatgtatattttgttgcat |
49696697 |
T |
|
| Q |
387 |
gt-taataagtgtaggttgtgt |
407 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
49696696 |
gtcaaataagtgtaggttgtgt |
49696675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 441597 - 441655
Alignment:
| Q |
215 |
gacattgaaattaccaacaattttgcttatttcattggaatgtattgtgctctcaagtt |
273 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
441597 |
gacattgaaaataccaacaattttgcatatttcattggaatgtattgtgctctcaagtt |
441655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 441556 - 441597
Alignment:
| Q |
133 |
ttttttgcttcaatctatatatcagtttgaaaataaatagtg |
174 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
441556 |
ttttttgcttcaatctatatatcattatgaaaataaatagtg |
441597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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