View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_15 (Length: 428)
Name: NF11127_high_15
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 42 - 409
Target Start/End: Original strand, 11029866 - 11030252
Alignment:
| Q |
42 |
cttaaaattgtctaaaaagttggttgacattagccaaactgcaaaatagaatgtatgtaacaacacaaaa-gtaaaaaatctgaacggnnnnnnnnnca- |
139 |
Q |
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| T |
11029866 |
cttaaaattgtctcaaaaattggttgacattagccaaactgcaaaatagaatgtatgtaacaacacaaaaagttaaaaatctgaacggaaaaaaaataac |
11029965 |
T |
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| Q |
140 |
-----------acaatatgaaaataaaatgtaattcacttcagcataaggaataagaaaaaatagaattacattgtagtctactgtat-----gaaagaa |
223 |
Q |
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| T |
11029966 |
agaaccagacgacaatatgaaaataaaatgtaattcacttcagcataaggaataagaaaaaatagaattacattgtaatctactgtatagaatgaaagaa |
11030065 |
T |
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| Q |
224 |
gaaatagtaaagcaaaaatggtctaatgtaatccaatcaaatga-gttaggtcataaaagttacaatagttaaccacaaattctaacacgggcaacgaaa |
322 |
Q |
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| T |
11030066 |
gaaatagtaaagcaaaaatgatctcatgaaatccaataaaatgaagttaggtcataaaagtttcaatagttaaccacaaattctaacgcgggcaacgaaa |
11030165 |
T |
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| Q |
323 |
acgacaaagaaacatcgacacagctagtgtcaacaacattggacatcgacaccaaaatatacatgtatgaattatccgacacatatt |
409 |
Q |
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| T |
11030166 |
atgacaaagaaacatcgacacagctagtgtcaacaacattggacatcgacaccgaaatatacatgtatgaattttccgacacatatt |
11030252 |
T |
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