View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_17 (Length: 409)
Name: NF11127_high_17
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Original strand, 36842264 - 36842643
Alignment:
| Q |
12 |
ttggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaaactaaatgttagtaggcaatgtagtattc |
111 |
Q |
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| T |
36842264 |
ttggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaaacaaaatgttagtaggcaatgtagtattc |
36842363 |
T |
|
| Q |
112 |
ataatgctgtcttattctaattgcaaggtgaaaattgtttttctatccgcaaagaaaaattgaagcttgttcttcactgatatagctttattactatttt |
211 |
Q |
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| T |
36842364 |
ataatgctgtcttattctaattgcaaggtgaaaattgtttttctatcctcaaagaaaaattgaagcttgttcttcactgatatagctttattactatttt |
36842463 |
T |
|
| Q |
212 |
gtatccccctgcctttaataatttaataaaagcagtcaagcctcttgccaattattacaaattattttcaattgtcacatattgtaaagtaacctaacct |
311 |
Q |
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| T |
36842464 |
gtatccccctacctttactaatttaataaaagcagtcacgcctcttgccaattattacaaattattttcaattgtcacatgttgtaaagtaacctaacct |
36842563 |
T |
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| Q |
312 |
gtattgtcattctaatcaattgagcatgcttgttggtgaatcattttacgaaattatatatggccatatcttttcgcttt |
391 |
Q |
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| T |
36842564 |
gtattgtcattctaatcaattgagcatgcttgttggtgaatcattttacgaaattatatatggccatatcttttcgcttt |
36842643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 37513834 - 37513448
Alignment:
| Q |
14 |
ggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaaactaaatgttagtaggcaatgtagtattcat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
37513834 |
ggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaagcaaaatgttagtaggcaatgtagtattcat |
37513735 |
T |
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| Q |
114 |
aatgctgtcttattctaattgcaaggtgaaaattgtttttctatccgcaaagaaaaa--------------ttgaagcttgttcttcactgatatagctt |
199 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| |||| | |||||| ||| |||||||||||||||||||||||| |||| |
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| T |
37513734 |
aatgctgtcttattctaattgctaggtgaaagttgttttcctattctcaaagataaaaaataaatagaaatttgaagcttgttcttcactgatatggctt |
37513635 |
T |
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| Q |
200 |
tattactattttgtatccccctgcctttaataatttaataaaagcagtcaagcctcttgccaattattacaaattattttcaattgtcacatattgtaaa |
299 |
Q |
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| T |
37513634 |
tcttactattttctatccccctacctctaataatttaataaaagcagtcacgcctcttaccaattattacaagttattttcaattatcacatgttgtaaa |
37513535 |
T |
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| Q |
300 |
gtaacctaacctgtattgtcattctaatcaattgagcatgcttgttggtgaatcattttacgaaattatatatggccatatcttttc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37513534 |
gtaacctaacctgtattgtcattctaatcaattgagcatgctttttggtgaatcattttaccaaattatatatggccatatcttttc |
37513448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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