View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_high_23 (Length: 334)
Name: NF11127_high_23
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 54572274 - 54572531
Alignment:
| Q |
20 |
tacttgtcattttctctaattattatcggtgttgtgttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572274 |
tacttgtcattttctctaattattatcggtgttgtgttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattg |
54572373 |
T |
|
| Q |
120 |
caattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54572374 |
caattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatat |
54572473 |
T |
|
| Q |
220 |
cattgattttcattcctccatgaat-ccccattcacactttctcagttatcaaaaata |
276 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54572474 |
cattgattttcattcctccatgaatcccccattcacactttctcagttatcaaaaata |
54572531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 55155541 - 55155798
Alignment:
| Q |
20 |
tacttgtcattttctctaattattatcggtgttgtgttctattcgtatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55155541 |
tacttgtcattttctctaattattatcggtgttgtgttctattcttatatgtgcttgtgcttcataggtagttaattcactttttaagagtaaataattg |
55155640 |
T |
|
| Q |
120 |
caattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55155641 |
caattaagtgagtaagagccttatatactttgggatagaatttcattgcaaaatgcatagggtctccatgaatcattggttaggactgacaaatctatat |
55155740 |
T |
|
| Q |
220 |
cattgattttcattcctccatgaatcc-ccattcacactttctcagttatcaaaaata |
276 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55155741 |
cattgattttcattcctccatgaatcctccattcacactttctcagttatcaaaaata |
55155798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 4097269 - 4097355
Alignment:
| Q |
190 |
aatcattggttaggactgacaaatctatatcattgattttcattcctccatgaatccccattcacactttctcagttatcaaaaata |
276 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||| ||||||| | |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4097269 |
aatcattgattaggactgagaaatctaaatcattgattttgattcctcaaagaatccccattcacgctttctgagttatcaaaaata |
4097355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University