View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_25 (Length: 330)
Name: NF11127_high_25
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 26536496 - 26536797
Alignment:
| Q |
18 |
cttaaaagcaaccttatgactcaatagaggatcccttaatcccatagttttgatgttagatatggactccctcaaagagccataggcttcctcagttctc |
117 |
Q |
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| T |
26536496 |
cttaaaagcaaccttatgactcaatagaggatcccttaatcccatagttttgatgttagatatggactccctcaaagagtcataggcttcctcagaaccc |
26536595 |
T |
|
| Q |
118 |
aaattgcgtcttattttctccttatcggctagggactcatcaaaggtttttactacgttagcttgttgagaatcaaaatagtcacgaggatccttgatac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536596 |
aaattgcgtcttattttctccttatcggctagggactcatcaaaggtttttactacgttagcttgttgagaatcaaaatagtcacgaggatccttgatac |
26536695 |
T |
|
| Q |
218 |
aaagtggtacaaatggatgattatcttgtgcctgaagatcttcaatctgagctatcttagaaattctgtttcgcctttcctccacaaccccatcagattc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26536696 |
aaagtggtacaaatggatgattatcttgtgcctgaagatcttcaatctgggctgtcttagaaattctgtttcgcctctcctccacaaccccatcagattc |
26536795 |
T |
|
| Q |
318 |
at |
319 |
Q |
| |
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|| |
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| T |
26536796 |
at |
26536797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 40347905 - 40348098
Alignment:
| Q |
18 |
cttaaaagcaaccttatgactcaatagaggatcccttaatcccatagttttgatgttagatatggactccctcaaagagccataggcttcctcagttctc |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
40347905 |
cttaaaagcaacctcatgactcaatagaggatcccttaatcccatagttttgatgttagatatggactccctcaaagagccataggcttcctcagaaccc |
40348004 |
T |
|
| Q |
118 |
aaattgcgtcttattttctccttatcggctagggactcatcaaaggtttttactacgttagcttgttgagaatcaaaatagtcacgaggatcct |
211 |
Q |
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||||||| |||||||||||||||| ||| |||||| ||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||| |
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| T |
40348005 |
aaattgcatcttattttctccttaccggatagggaatcatccaaggtttttaccgcattagcttgttgggaatcaaaatagtcacgaggatcct |
40348098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 40348237 - 40348345
Alignment:
| Q |
209 |
ccttgatacaaagtggtacaaatggatgattatcttgtgcctgaagatcttcaatctgagctatcttagaaattctgtttcgcctttcctccacaacccc |
308 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| || |
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| T |
40348237 |
ccttgatacagagtggtgcaaatggatgatcatcttgtgcctgaagatcttcaatctgggccatcttagaaattctgtttcgcctctcctctacaactcc |
40348336 |
T |
|
| Q |
309 |
atcagattc |
317 |
Q |
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||||||||| |
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| T |
40348337 |
atcagattc |
40348345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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