View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_26 (Length: 303)
Name: NF11127_high_26
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 3340382 - 3340652
Alignment:
| Q |
18 |
ttgttaatacttagaattttatatatgtttgtatgtggaatgtgacaatgcagaagccaacctgttattccttgaatctcctgttggagttggattttcc |
117 |
Q |
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| T |
3340382 |
ttgttaatacttagaattttatatatgtttgtatgtggaatgtgacaatgcagaagccaacctgttattccttgaatctcctgttggagttggattttcc |
3340481 |
T |
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| Q |
118 |
tactcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtatttttcttaatctaaaatctttcatgcatattaaaatgttacattttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3340482 |
tactcaaatacaaccagtgaatacaaacaattgggagatgatttcacaggtattttacttaatctaaaatctttcatgcatattaaaatgttacattttc |
3340581 |
T |
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| Q |
218 |
cctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaatttatgaaacagc |
288 |
Q |
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| T |
3340582 |
cctaaaatatatgctacattttctatttttccttgctgatacaaaatactcacataaatttatgaaacagc |
3340652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 3332856 - 3332931
Alignment:
| Q |
65 |
atgcagaagccaacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaata |
140 |
Q |
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| T |
3332856 |
atgcagaagcaaacatgttattcttggaatctcctgttggagttggattttcttattcaaatacaaccagtgaata |
3332931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 35794746 - 35794644
Alignment:
| Q |
66 |
tgcagaagccaacctgttattccttgaatctcctgttggagttggattttcctactcaaatacaaccagtgaatacaaacaattgggagatgatttcaca |
165 |
Q |
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||||||||||||| |||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||| ||||| |||||| |
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| T |
35794746 |
tgcagaagccaacatgttattcctagaatctcctgtcggagttggcttttcctattcaaatacaaccagtgattatcaacaattgggtgatgacttcaca |
35794647 |
T |
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| Q |
166 |
ggt |
168 |
Q |
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||| |
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| T |
35794646 |
ggt |
35794644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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