View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_3 (Length: 675)
Name: NF11127_high_3
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Complemental strand, 34683740 - 34683079
Alignment:
| Q |
1 |
ggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683740 |
ggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatcc |
34683641 |
T |
|
| Q |
101 |
acaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683640 |
acaaaaattgaatctagatatataaagatggaggagatagactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccg |
34683541 |
T |
|
| Q |
201 |
ttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctctaggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaata |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683540 |
ttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctctaggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaata |
34683441 |
T |
|
| Q |
301 |
gtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcgtggaccaaaaacgatcaacgtttaaagattgaattgatttacaatttactatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34683440 |
gtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcgtggaccaaaaacgatcaacttttaaagattgaattgatttacaatttactatt |
34683341 |
T |
|
| Q |
401 |
gaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagctttaatgttgaacattgagcaaactgaatgctaccatatttgtgg |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683340 |
gaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagctttaatgttgaacattgagcaaactgaatgctaccatatttgtgg |
34683241 |
T |
|
| Q |
501 |
gcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtcattgtcatcaaagcctcataaagactcaaatggttgcg |
600 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34683240 |
gcgtttttggttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtcattgtcatcaaagcctcataaagactcaaatggttgcg |
34683141 |
T |
|
| Q |
601 |
atattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctttg |
662 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34683140 |
atattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctttg |
34683079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 26981413 - 26981067
Alignment:
| Q |
1 |
ggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatcttgttacctacatctagtcctcgtgtttaatcatatgagattttcatcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26981413 |
ggtaactaagatgacaccgagatttattctgattcagtcgcatatcctatcttgttacctacatctagtcctcttgtttaatcatatgagattttcatcc |
26981314 |
T |
|
| Q |
101 |
acaaaaattgaatctagatatataaagatgaaggagatagactcactaatgtgggatgggaacaaggagctggagtgtactctttgccgaccctgccccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26981313 |
acaaaaattgaatctagatatataaagatggaggagatagactcactaatgtgggatgggaacaaggagctggagtgtactttttgccgaccctgccccg |
26981214 |
T |
|
| Q |
201 |
ttgacatcccgtcagatctgagatattttgatggtggtgttgaatggcctctaggtgtaggaccttcctcggcaaccttcttctttgacggcgaggaata |
300 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
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|
| T |
26981213 |
ttgacatctcctgtcatctgagatattttgatggtggtgttgaatggcctctaggtgtaggaccttcgtcggcaatcttcttctttgacggcaaggaata |
26981114 |
T |
|
| Q |
301 |
gtatttgcgaagacactcaatacttaaatttgtatttgtaagcatcg |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26981113 |
gtatttgcgaacacactcaatacttaaatttgtatttgtaagcatcg |
26981067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 478 - 660
Target Start/End: Complemental strand, 26980882 - 26980698
Alignment:
| Q |
478 |
actgaatgctaccatatttgtgggcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacactgtcatt---gtcatcaaa |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26980882 |
actgaatgctaccatatttgtgggcgtttttggttcgcccaataactttccatttacggtggatgacactgccttcgacactgtcattgtcgtcatcaaa |
26980783 |
T |
|
| Q |
575 |
gcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctt |
660 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26980782 |
gcctcat-aagactcaaatggttgtgatattttgcatttgttcttctgacaacttcaagtttctaaaatccccatgtttttccctt |
26980698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 360 - 642
Target Start/End: Original strand, 27083941 - 27084221
Alignment:
| Q |
360 |
gatcaacgtttaaagattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaagcttta |
459 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||| |||| ||| ||| ||||||||| |||||| ||||||||| |
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|
| T |
27083941 |
gatcaatgtttaaagattgaattgttttacaatttactgctcaaattcaaagacttaacttatcattattgat-tttcacccttactctaggaagcttta |
27084039 |
T |
|
| Q |
460 |
atgttgaacattgagcaaactgaatgctaccatatttgtgggcgttttttgttcgcccaagaactttccatttacggtggatgacactgccttcgacact |
559 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||| ||||||||| || |||||||||||| |||||||||||||| ||||||| |||||| | ||| |
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|
| T |
27084040 |
atgttgaacattgaacaaacttaatgagaccataattgtgggcgccgttggttcgcccaagaggtttccatttacggttcatgacaccgccttctatact |
27084139 |
T |
|
| Q |
560 |
gtcattgtcatcaaagcctcataaagactcaaatggttgcgatattttgcatttgttcttctgacaacttcaagtttctaaaa |
642 |
Q |
| |
|
|||||||||||||| || |||||| |||| ||||||||||| ||||| ||||| |||||| ||| ||||| |||||||||| |
|
|
| T |
27084140 |
atcattgtcatcaaaaccgcataaa-actcgaatggttgcgacattttccatttcttcttcggacgacttctggtttctaaaa |
27084221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 354 - 483
Target Start/End: Complemental strand, 27022332 - 27022203
Alignment:
| Q |
354 |
aaaaacgatcaacgtttaaagattgaattgatttacaatttactattgaaattcaaagacttaacatatctttagtgaactttcaccctcactctacgaa |
453 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||| ||| |
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|
| T |
27022332 |
aaaagcgatcaatgtttaaagattggatcgatttccaatttacggctgaaattcaaagacttaacatatctttcgttaactttgaccctcactctaggaa |
27022233 |
T |
|
| Q |
454 |
gctttaatgttgaacattgagcaaactgaa |
483 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
27022232 |
gctttaatgttgaacattgaacaaactgaa |
27022203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 27082658 - 27082815
Alignment:
| Q |
12 |
tgacaccgagatttattctgattcagtcgcatatcctatcttgttacctaca--tctagtcctcgtgtttaatcatatgagattttcatccacaaaaatt |
109 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||||||||| ||| |||||||||| ||||||| | |||||| |||| ||||| ||||| |
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|
| T |
27082658 |
tgacaccgaaatttatttcggttcagtcgcatatcctatcttgttaccaacatctctagtcctcatgtttaacc--atgagagtttcttccactaaaatg |
27082755 |
T |
|
| Q |
110 |
gaatctagatatataaagatgaaggagatagactcactaatgtgggatgggaacaaggag |
169 |
Q |
| |
|
||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
27082756 |
gaatctagatatataaagacagggaagataaactcaccaatgtgggatgggaacaaggag |
27082815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 27022809 - 27022764
Alignment:
| Q |
36 |
agtcgcatatcctatcttgttacctacatctagtcctcgtgtttaa |
81 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||||||| |
|
|
| T |
27022809 |
agtcgcatatcctatctcgttaccaacatctagtcctcatgtttaa |
27022764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 27022697 - 27022623
Alignment:
| Q |
221 |
agatattttgatggtggtgttgaatggcctctaggtgtaggaccttcctcggcaaccttcttctttgacggcgagg |
296 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||| || ||||| | | ||||||||||||||||||||||| |
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|
| T |
27022697 |
agatctttggatggtggtgttgaatggcctctgagtgt-gggccttcgttgcaaaccttcttctttgacggcgagg |
27022623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 30219727 - 30219683
Alignment:
| Q |
86 |
atgagattttcatccacaaaaattgaatctagatatataaagatg |
130 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
30219727 |
atgagattttcatcccctaaaattgaatctagatatataaagatg |
30219683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30222288 - 30222250
Alignment:
| Q |
1 |
ggtaactaagatgacaccgagatttattctgattcagtc |
39 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
30222288 |
ggtaagtaagatgacaccgagatttattctggttcagtc |
30222250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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