View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_39 (Length: 250)
Name: NF11127_high_39
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 21150747 - 21150990
Alignment:
| Q |
1 |
aatacttaaagatcctggtataacagctgaacctattatgaatcgaaagagcctagaggatcataaaaccatcatctcccacaaaaatgtacaggatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21150747 |
aatacttaaagatcctggtataacagctgaacctattatgaatcgaaagagcctagaggatcataaaaccatcatctcccacaaaaatgtacaggatcaa |
21150846 |
T |
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| Q |
101 |
cttgaagatggaaaacttattatggagaaatgtatccattgttatttaataatgttattgcaccatttatcatattttcagttcgagatgatatatgttg |
200 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21150847 |
cttcaagatgtaaaacttattatggagaaatgtatccattgttatttaataatgttattgcaccatttatcatattttcagttcgagatgatatatgttg |
21150946 |
T |
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| Q |
201 |
cactgacacattgaaggcgtattccgtgtctatgtctctgcttc |
244 |
Q |
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|||| ||||||||||||||| |||||||||||||||| |||||| |
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| T |
21150947 |
cactaacacattgaaggcgtgttccgtgtctatgtctttgcttc |
21150990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 33726559 - 33726689
Alignment:
| Q |
1 |
aatacttaaagatcctggtataacagctgaacctattatgaatcgaaagagcctagaggatcataaaaccatcatctcccacaaaaatgtacaggatcaa |
100 |
Q |
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||||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||| ||| |
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| T |
33726559 |
aatacttaaggattctgatataaaagctgaacctattgtgaatcgaaagagccaagaggatcataaaaccgacatctcccccaaaaaactacaggaacaa |
33726658 |
T |
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| Q |
101 |
cttgaagatggaaaacttattatggagaaat |
131 |
Q |
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|||||||| | |||||||||||||||||||| |
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| T |
33726659 |
cttgaagaggtaaaacttattatggagaaat |
33726689 |
T |
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