View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_45 (Length: 241)
Name: NF11127_high_45
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_45 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21150496 - 21150272
Alignment:
| Q |
1 |
ttttgtgaagctaaaattcaagcttttttgatatcatatcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaatgccatagac |
100 |
Q |
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| T |
21150496 |
ttttgtgaagctaaaattcaagcttttttgatatcatatcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaatgccatagac |
21150397 |
T |
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| Q |
101 |
aatactaccataaactacagggtaataatccaaatcaatatcaatagttaacatataatgtatttaaattgattatgttaaatgtgacagtgtttcaagt |
200 |
Q |
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| T |
21150396 |
aatactaccataaactacagggtaataatccaaatcaatatcaatagttaatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgt |
21150297 |
T |
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| Q |
201 |
gcatctaataaagcatcttcattat |
225 |
Q |
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| T |
21150296 |
gcatctaataaagcatcttcattat |
21150272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 33706532 - 33706469
Alignment:
| Q |
39 |
tcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaatgccatagacaa |
102 |
Q |
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| T |
33706532 |
tcacaactgaaaaaggatgaatggtgcaatggcttgattaaattgaatccatttccataaacaa |
33706469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 21181634 - 21181565
Alignment:
| Q |
156 |
taatgtatttaaattgattatgttaaatgtgacagtgtttcaagtgcatctaataaagcatcttcattat |
225 |
Q |
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| T |
21181634 |
taatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattat |
21181565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 21174002 - 21173954
Alignment:
| Q |
39 |
tcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatc |
87 |
Q |
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| T |
21174002 |
tcacaactgaaaaaggttgaatggtgcaatggcttgattaaagtgaatc |
21173954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 33711953 - 33711900
Alignment:
| Q |
66 |
aatggcttgattaaagtgaatccaatgccatagacaatactaccataaactaca |
119 |
Q |
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| T |
33711953 |
aatggctagattaaagtgaatccaatgccataaacaacactaccataaattaca |
33711900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 31106490 - 31106548
Alignment:
| Q |
155 |
ataatgtatttaaattgattatgttaaatgtgacagtgtttcaagtgcatctaataaag |
213 |
Q |
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| T |
31106490 |
ataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
31106548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 21280268 - 21280220
Alignment:
| Q |
42 |
caactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaat |
91 |
Q |
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| T |
21280268 |
caactgaaaaa-gatgaatggtgcaatggcttgaataaagtaaatacaat |
21280220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 65080 - 65266
Alignment:
| Q |
39 |
tcacaactgaaaaatgatgaatggtgcaatggcttgattaaagtgaatccaatgccatagacaatactaccataaactacagggta---ataatccaaat |
135 |
Q |
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| T |
65080 |
tcacaaccgaaaaatgatgaatggtgcaatggcttgattaaactgaatccaatgccataaacaatactaccataaactacagagtaagtataattcaaag |
65179 |
T |
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| Q |
136 |
caatatcaatagttaacatataatgtatttaaattgattatgttaaatgtgacagtgtttcaagtgcatctaataaagcatcttcat |
222 |
Q |
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|||||||||| || || |||||||||||||| | |||||||||||||||||| ||||||||| |||||| ||| ||||||||||||| |
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| T |
65180 |
caatatcaatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcat |
65266 |
T |
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