View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11127_high_46 (Length: 238)

Name: NF11127_high_46
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11127_high_46
NF11127_high_46
[»] chr5 (15 HSPs)
chr5 (18-223)||(13381031-13381247)
chr5 (87-144)||(33752490-33752547)
chr5 (87-144)||(33848129-33848186)
chr5 (20-134)||(12080438-12080563)
chr5 (45-144)||(10053807-10053910)
chr5 (79-131)||(22616715-22616767)
chr5 (19-131)||(33163737-33163858)
chr5 (79-131)||(36055649-36055701)
chr5 (80-131)||(21320973-21321024)
chr5 (82-127)||(41417356-41417401)
chr5 (87-131)||(10237635-10237679)
chr5 (79-131)||(27579248-27579300)
chr5 (154-183)||(42682451-42682480)
chr5 (79-111)||(25654591-25654623)
chr5 (87-131)||(29766584-29766628)
[»] chr2 (18 HSPs)
chr2 (153-224)||(44595815-44595886)
chr2 (69-131)||(17244834-17244896)
chr2 (79-131)||(18059136-18059188)
chr2 (79-131)||(18947384-18947436)
chr2 (18-131)||(6177996-6178120)
chr2 (87-144)||(59382-59439)
chr2 (79-131)||(19093676-19093728)
chr2 (26-125)||(41644101-41644211)
chr2 (90-132)||(18514517-18514559)
chr2 (19-131)||(39788313-39788436)
chr2 (87-144)||(43445343-43445400)
chr2 (79-129)||(15651072-15651122)
chr2 (74-120)||(18779176-18779222)
chr2 (87-133)||(40912472-40912518)
chr2 (20-73)||(18059066-18059119)
chr2 (88-133)||(32652619-32652664)
chr2 (71-128)||(34441646-34441703)
chr2 (18-50)||(18947312-18947344)
[»] chr4 (10 HSPs)
chr4 (87-144)||(28292442-28292499)
chr4 (79-131)||(2570700-2570752)
chr4 (87-131)||(49878897-49878941)
chr4 (71-131)||(9743812-9743872)
chr4 (88-131)||(2266639-2266682)
chr4 (19-73)||(2266560-2266614)
chr4 (67-120)||(1012520-1012573)
chr4 (20-73)||(17612625-17612678)
chr4 (103-144)||(22722026-22722067)
chr4 (87-144)||(47237465-47237522)
[»] chr8 (10 HSPs)
chr8 (152-220)||(3859211-3859279)
chr8 (79-131)||(3038627-3038679)
chr8 (79-131)||(7290941-7290993)
chr8 (50-131)||(6267250-6267331)
chr8 (88-131)||(30651026-30651069)
chr8 (79-131)||(18756441-18756493)
chr8 (87-131)||(34685997-34686041)
chr8 (93-144)||(1872700-1872751)
chr8 (20-73)||(7291010-7291063)
chr8 (79-128)||(28220807-28220856)
[»] chr3 (22 HSPs)
chr3 (20-128)||(7758139-7758247)
chr3 (87-144)||(12121235-12121292)
chr3 (19-131)||(32180454-32180577)
chr3 (79-131)||(19606688-19606740)
chr3 (80-131)||(44881012-44881063)
chr3 (82-128)||(45879264-45879310)
chr3 (25-144)||(47871197-47871327)
chr3 (82-137)||(36689668-36689723)
chr3 (87-134)||(40744221-40744268)
chr3 (98-144)||(5125429-5125475)
chr3 (69-131)||(47930431-47930493)
chr3 (98-144)||(54607861-54607907)
chr3 (87-144)||(11019687-11019744)
chr3 (74-131)||(40640400-40640457)
chr3 (79-131)||(26000754-26000806)
chr3 (87-131)||(49359410-49359454)
chr3 (18-73)||(38392330-38392385)
chr3 (80-131)||(38392403-38392454)
chr3 (87-144)||(4556957-4557014)
chr3 (20-73)||(7568430-7568483)
chr3 (20-73)||(42664026-42664079)
chr3 (79-131)||(51878335-51878387)
[»] chr1 (11 HSPs)
chr1 (71-131)||(27118552-27118612)
chr1 (18-73)||(15964391-15964446)
chr1 (88-131)||(47554977-47555020)
chr1 (87-144)||(422192-422249)
chr1 (88-144)||(7842378-7842434)
chr1 (79-132)||(16135544-16135597)
chr1 (79-131)||(13876693-13876745)
chr1 (79-131)||(15964322-15964374)
chr1 (88-131)||(3120645-3120688)
chr1 (88-139)||(28012917-28012968)
chr1 (87-131)||(25943420-25943464)
[»] scaffold0001 (1 HSPs)
scaffold0001 (87-144)||(65979-66036)
[»] scaffold0200 (1 HSPs)
scaffold0200 (71-131)||(24584-24644)
[»] chr6 (4 HSPs)
chr6 (79-131)||(4104238-4104290)
chr6 (87-131)||(6613775-6613819)
chr6 (93-133)||(18306669-18306709)
chr6 (20-73)||(34994122-34994175)
[»] scaffold0312 (1 HSPs)
scaffold0312 (87-144)||(8323-8380)
[»] scaffold0050 (1 HSPs)
scaffold0050 (62-131)||(5811-5880)
[»] chr7 (10 HSPs)
chr7 (79-131)||(4618529-4618581)
chr7 (79-131)||(22955086-22955138)
chr7 (79-131)||(40382111-40382163)
chr7 (79-131)||(49002446-49002498)
chr7 (79-131)||(4902542-4902594)
chr7 (18-70)||(7743224-7743276)
chr7 (79-131)||(8133333-8133385)
chr7 (71-131)||(10675025-10675085)
chr7 (79-131)||(23402146-23402198)
chr7 (79-131)||(7743152-7743204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (71-144)||(107936-108009)
[»] scaffold0262 (1 HSPs)
scaffold0262 (87-137)||(11455-11505)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 13381247 - 13381031
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg-----------gatctctctaaagctaaactttaccttattaca 106  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||           || |||||||| ||||||||||||||||||| |    
T  13381247 agaaaaattattttgtttagtcaatagtataactgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttattata 13381148  T
Q  107 aatcaatcatcatacaaaatattaattacttttgattttaccttaattactgattttaaataaatgatgctacaaacaggaattgaattgttttgaactg 206  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  13381147 aatcaatcctcatacaaaatattaattacttttgattttaccttaattactgattttatataaatgatgctacaaactggaattgcattgttttgaactg 13381048  T
Q  207 ttgagatagatgatgtt 223  Q
    |||||||||||||||||    
T  13381047 ttgagatagatgatgtt 13381031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 33752490 - 33752547
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  33752490 ctaaactttaccttattaaaaatcaatcctcatacaaaatattaattatttttgattt 33752547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 33848129 - 33848186
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  33848129 ctaaactttaccttattaaaaatcaatcctcatacaaaatattaattatttttgattt 33848186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 12080438 - 12080563
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagcta-----------gtggatctctctaaagctaaactttaccttattacaaa 108  Q
    |||| |||||||||||||||||||| |||| ||||||||||||||||||||           ||||| | || |||  ||||||||||||||||||||||    
T  12080438 aaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaagactaaactttaccttattacaaa 12080537  T
Q  109 tcaatcatcatacaaaatattaatta 134  Q
    ||| || |||||||||||||| ||||    
T  12080538 tcagtcctcatacaaaatatttatta 12080563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 10053910 - 10053807
Alignment:
Q  45 tataactgttgatgtcatgtcagctagtg--gatctctctaaagctaaactttaccttattacaaa--tcaatcatcatacaaaatattaattacttttg 140  Q
    |||||||||||||||||||||||||||||  || | |||||   ||||| ||||| ||||||||||  ||| || ||||||||||||||||||||| |||    
T  10053910 tataactgttgatgtcatgtcagctagtgtggaccactctacgactaaattttactttattacaaaaatcagtcctcatacaaaatattaattactcttg 10053811  T
Q  141 attt 144  Q
    ||||    
T  10053810 attt 10053807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 22616767 - 22616715
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  22616767 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 33163858 - 33163737
Alignment:
Q  19 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg----------gatctctctaaagctaaactttaccttattacaaa 108  Q
    |||||||||||| |||||||| ||| ||||||||  |||||||||||||||||||          || | || |||| ||||||||||||||||||||||    
T  33163858 gaaaaattattt-gtttagtcaatagtataactgccgatgtcatgtcagctagtgtcatgctgtggaccactttaaaactaaactttaccttattacaaa 33163760  T
Q  109 tcaatcatcatacaaaatattaa 131  Q
    ||| || ||||||||||||||||    
T  33163759 tcagtcttcatacaaaatattaa 33163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 36055649 - 36055701
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |||||||    
T  36055649 ctctaaaactaaactttaccttattacaaatcaattctcatacaagatattaa 36055701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 21321024 - 21320973
Alignment:
Q  80 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||||||||    
T  21321024 tctaaaactaaactttaccttcctacaaatcaatcctcatacaaaatattaa 21320973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 41417356 - 41417401
Alignment:
Q  82 taaagctaaactttaccttattacaaatcaatcatcatacaaaata 127  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||    
T  41417356 taaaactaaattttaccttattacaaatcagtcatcatacaaaata 41417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 10237679 - 10237635
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||    
T  10237679 ctaaactttaccttattacaaattagtcatcgtacaaaatattaa 10237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 27579300 - 27579248
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || | | ||||||||||||    
T  27579300 ctctaaaactaaactttaccttattacaaatcattccttaaacaaaatattaa 27579248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 42682480 - 42682451
Alignment:
Q  154 tactgattttaaataaatgatgctacaaac 183  Q
    ||||||||||||||||||||||||||||||    
T  42682480 tactgattttaaataaatgatgctacaaac 42682451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 25654623 - 25654591
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatca 111  Q
    ||||||| |||||||||||||||||||||||||    
T  25654623 ctctaaaactaaactttaccttattacaaatca 25654591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 29766584 - 29766628
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||    
T  29766584 ctaaactttaccttattacaaattagttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 44595815 - 44595886
Alignment:
Q  153 ttactgattttaaataaatgatgctacaaacaggaattgaattgttttgaactgttgagatagatgatgttg 224  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||    
T  44595815 ttactgattttaaataaatgatgctacaaactggaattgcattgctctgaactgttgagatagatgatgttg 44595886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 17244834 - 17244896
Alignment:
Q  69 tagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| | ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  17244834 tagtggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 18059136 - 18059188
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  18059136 ctctaaaactaaactttaccttgttacaaatcagtcatcatacaaaatattaa 18059188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 18947384 - 18947436
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  18947384 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 18947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 6178120 - 6177996
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg-----------gatctctctaaagctaaactttaccttattaca 106  Q
    |||||| ||||||||||||| | ||| ||||||||  |||||||||||||||||||           || | ||||| | ||||||||||||||||||||    
T  6178120 agaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaactttaccttattaca 6178021  T
Q  107 aatcaatcatcatacaaaatattaa 131  Q
    ||||| ||||| |||||||||||||    
T  6178020 aatcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 59439 - 59382
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  59439 ctaaattttatcttattataaatcagtcatcgtacaaaatattaattacttttgattt 59382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 19093728 - 19093676
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || || |||||||||||||    
T  19093728 ctctaaaactaaactttaccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 41644211 - 41644101
Alignment:
Q  26 tattttgtttagtcgataatataactgttgatgtcatgtcagcta-----------gtggatctctctaaagctaaactttaccttattacaaatcaatc 114  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||           ||||| | ||||||| ||||||| ||||||||||||||||| ||    
T  41644211 tattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctaccttattacaaatcagtc 41644112  T
Q  115 atcatacaaaa 125  Q
     ||||||||||    
T  41644111 ctcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 18514517 - 18514559
Alignment:
Q  90 aactttaccttattacaaatcaatcatcatacaaaatattaat 132  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  18514517 aactttactttattataaatcaatcatcatacaaaatattaat 18514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 39788313 - 39788436
Alignment:
Q  19 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtca-----------gctagtggatctctctaaagctaaactttaccttattacaa 107  Q
    |||||| |||||||||||||| ||| ||||||||| ||||||||||||           ||| ||||| | |||||||  ||||||||||||||||||||    
T  39788313 gaaaaagtattttgtttagtcaatagtataactgtcgatgtcatgtcaattggtgtcctgctggtggaccactctaaaaataaactttaccttattacaa 39788412  T
Q  108 atcaatcatcatacaaaatattaa 131  Q
    |||| |  |||||| |||||||||    
T  39788413 atcagttctcatacgaaatattaa 39788436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 43445343 - 43445400
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||| ||||| ||||||||||| | || | |||||||||||||||||||||||||||    
T  43445343 ctaaattttactttattacaaattagtccttatacaaaatattaattacttttgattt 43445400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 15651122 - 15651072
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatatt 129  Q
    |||||||  |||||||||| ||||||||||||| || ||||||||||||||    
T  15651122 ctctaaaattaaactttactttattacaaatcagtcctcatacaaaatatt 15651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 18779176 - 18779222
Alignment:
Q  74 gatctctctaaagctaaactttaccttattacaaatcaatcatcata 120  Q
    |||| ||||||| ||||||||||||||||||||||||| || |||||    
T  18779176 gatcactctaaaactaaactttaccttattacaaatcagtcgtcata 18779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 40912472 - 40912518
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaatt 133  Q
    ||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  40912472 ctaaattttactttattacaaatcagtcctcatacaaaatattaatt 40912518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 18059066 - 18059119
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||| ||||||||||||||| ||| ||||| ||| |||||||||| ||||||||    
T  18059066 aaaagttattttgtttagtcaatagtataattgtcgatgtcatgttagctagtg 18059119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 32652664 - 32652619
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaatt 133  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||||    
T  32652664 taaattttactttattacaaatcagtcctcatacaaaatattaatt 32652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 34441646 - 34441703
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatat 128  Q
    ||||||| || |||| |||| ||||| |||||||||||||| || |||||||||||||    
T  34441646 gtggatcactttaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 34441703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 18947312 - 18947344
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataac 50  Q
    |||||||||||||||||||||||||| ||||||    
T  18947312 agaaaaattattttgtttagtcgatagtataac 18947344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 28292442 - 28292499
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28292442 ctaaactttaccttattacaaatcaataatcatacaaaatattaattacttttgattt 28292499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 2570752 - 2570700
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||    
T  2570752 ctctaaaactaaactttaccttattacaaatcattcctcaaacaaaatattaa 2570700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 49878941 - 49878897
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  49878941 ctaaactttaccttattataaatcagtcatcatacaaaatattaa 49878897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 9743872 - 9743812
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||| ||||| ||||| |||||||||| || || ||||||||||||||||    
T  9743872 gtggatcactctaaaactaaattttacattattacaaaccagtcctcatacaaaatattaa 9743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 2266639 - 2266682
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||| ||||||||||||| || ||||||||||||||||    
T  2266639 taaactttacattattacaaatcagtcctcatacaaaatattaa 2266682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 2266560 - 2266614
Alignment:
Q  19 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    ||||| ||||||||||||| | ||| ||||||||| |||| ||||||||||||||    
T  2266560 gaaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtg 2266614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 1012573 - 1012520
Alignment:
Q  67 gctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcata 120  Q
    ||||||||| |  |||||| ||||| |||||||||||||||||||||| |||||    
T  1012573 gctagtggaccattctaaaactaaattttaccttattacaaatcaatcttcata 1012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 17612678 - 17612625
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||| ||||||| ||||| | ||| ||||||||| |||||||||||||||||||    
T  17612678 aaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtg 17612625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 22722026 - 22722067
Alignment:
Q  103 tacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||    
T  22722026 tacaaatcattcatcgtacaaaatattgattacttttgattt 22722067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 47237522 - 47237465
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||| ||||||||||||||  || ||||| |||  ||||||||||||||||||    
T  47237522 ctaaacttttccttattacaaatcggtcctcatagaaagcattaattacttttgattt 47237465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 3859279 - 3859211
Alignment:
Q  152 attactgattttaaataaatgatgctacaaacaggaattgaattgttttgaactgttgagatagatgat 220  Q
    |||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  3859279 attactgattttaaataaattatgctacaaactggaattgcattgctttgaactgttgagatagatgat 3859211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 3038679 - 3038627
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3038679 ctctaaaactaaactttaccttattacaaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 7290993 - 7290941
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  7290993 ctctaaaactaaactttatcttattacaaatcaatcctcatacaaaatattaa 7290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 6267250 - 6267331
Alignment:
Q  50 ctgttgatgtcatgtcagctagtggatct-ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||| |||||||||||| ||||||  ||| || |||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  6267250 ctgtcgatgtcatgtcacctagtgt-tctgctttaaaactaaactttatcttattacaaatcagtcatcatacaaaatattaa 6267331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 30651026 - 30651069
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  30651026 taaactttaccttattacaaatcagtcatcatactaaatattaa 30651069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 18756441 - 18756493
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||| |||||||||||||||||||  || ||||||||||||||||    
T  18756441 ctctaaaactaatctttaccttattacaaatctgtcctcatacaaaatattaa 18756493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 34686041 - 34685997
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||    
T  34686041 ctaaactttactttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 1872700 - 1872751
Alignment:
Q  93 tttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||| |||||| |||||| || | |||||||||||||||||||||||||||    
T  1872700 tttactttattataaatcagtccttatacaaaatattaattacttttgattt 1872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 7291063 - 7291010
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| ||| ||||||    
T  7291063 aaaaattattttgtttaggcaatagtataactgtcgatgtcatatcaactagtg 7291010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 28220807 - 28220856
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatat 128  Q
    ||||||| |||| ||||| |||||||||||||| || |||||||||||||    
T  28220807 ctctaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 28220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 7758139 - 7758247
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcat 119  Q
    |||| ||||||||||||||| ||| ||||| ||  ||| ||||||||||||||||| | ||||||| |||| ||||| ||| |||||||||| || ||||    
T  7758139 aaaagttattttgtttagtcaatagtataattgccgatatcatgtcagctagtggagcactctaaaactaagctttatctttttacaaatcagtcttcat 7758238  T
Q  120 acaaaatat 128  Q
    |||||||||    
T  7758239 acaaaatat 7758247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 12121235 - 12121292
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||||||||||||||||| | || | |||||||||||||||||||||||||||    
T  12121235 ctaaactttaccttattacaaataactccttatacaaaatattaattacttttgattt 12121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 32180454 - 32180577
Alignment:
Q  19 gaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg-----------gatctctctaaagctaaactttaccttattacaa 107  Q
    ||||| ||||||||||||| | ||| |||||||| |||||||||||| |||||||           || | ||||||| |||||||||||||||||||||    
T  32180454 gaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccactctaaaactaaactttaccttattacaa 32180553  T
Q  108 atcaatcatcatacaaaatattaa 131  Q
    |||| || ||||||||||||||||    
T  32180554 atcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 19606688 - 19606740
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  19606688 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 19606740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 44881063 - 44881012
Alignment:
Q  80 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  44881063 tctaaaactaaactttaccttattacaaatcaatcctcatataaaatattaa 44881012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 45879264 - 45879310
Alignment:
Q  82 taaagctaaactttaccttattacaaatcaatcatcatacaaaatat 128  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  45879264 taaagctaaactttaccttattacaaatcagtcctcatacaaaatat 45879310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 47871327 - 47871197
Alignment:
Q  25 ttattttgtttagtcgataatataactgttgatgtcatgtcagctagtg-----------gatctctctaaagctaaactttaccttattacaaatcaat 113  Q
    ||||||| ||||| | |||||||||||||||||||||||||| ||||||           |||| ||||||   ||||||||||  | |||||||||| |    
T  47871327 ttattttatttagccaataatataactgttgatgtcatgtcaactagtgtcctgctgccggatcactctaagattaaactttacaatgttacaaatcagt 47871228  T
Q  114 catcatacaaaatattaattacttttgattt 144  Q
    | ||||| |||||||||||||||||||||||    
T  47871227 cctcatataaaatattaattacttttgattt 47871197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 36689723 - 36689668
Alignment:
Q  82 taaagctaaactttaccttattacaaatcaatcatcatacaaaatattaattactt 137  Q
    |||| ||||||||||| ||||||||||| | || ||||||||||||||||||||||    
T  36689723 taaaactaaactttactttattacaaataagtcctcatacaaaatattaattactt 36689668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 40744221 - 40744268
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaatta 134  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  40744221 ctaaacattaccttattacaaatcaatcctcatacaaaatataaatta 40744268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 5125475 - 5125429
Alignment:
Q  98 cttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  5125475 cttattacaaatcagtcctcttacaaaatattaattacttttgattt 5125429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 47930431 - 47930493
Alignment:
Q  69 tagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| | ||||||| |||| |||||| ||||||||||||| |||| ||||||||||||||    
T  47930431 tagtggaccactctaaaactaagctttactttattacaaatcagtcattatacaaaatattaa 47930493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 54607907 - 54607861
Alignment:
Q  98 cttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  54607907 cttattacaaatcagtcttcttacaaaatattaattacttttgattt 54607861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 11019744 - 11019687
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||| |||| |||||||||||||| || || || |||||||||||||||||||||||    
T  11019744 ctaaattttatcttattacaaatcagtcctcgtataaaatattaattacttttgattt 11019687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 40640400 - 40640457
Alignment:
Q  74 gatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||| ||||||| ||||||||||  ||||||||||||| || ||||||||||||||||    
T  40640400 gatcactctaaaactaaactttattttattacaaatcagtcctcatacaaaatattaa 40640457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 26000806 - 26000754
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||| ||||||||||||| |  ||||||||||||||||    
T  26000806 ctctaaaactaaactttactttattacaaatcagtactcatacaaaatattaa 26000754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 49359410 - 49359454
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  49359410 ctaaactttaccttattataaatcagtcctcatacaaaatattaa 49359454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 38392330 - 38392385
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||||| ||||||||||||| | |||||||||||| |||| |||| ||||||||||    
T  38392330 agaaaagttattttgtttagccaataatataactgctgatatcatatcagctagtg 38392385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 38392403 - 38392454
Alignment:
Q  80 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||| ||||| ||||| ||||||||||||| ||||| |||||||||||||    
T  38392403 tctaaaactaaattttacattattacaaatcagtcatcttacaaaatattaa 38392454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 4557014 - 4556957
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||| ||||||||||||||| || | ||| |||| | ||||||||||||||||    
T  4557014 ctaaacttttccttattacaaatcagtccttataaaaaacaataattacttttgattt 4556957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 7568430 - 7568483
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||| ||||||||||||||| ||| ||||||||| ||| | |||||||||||||    
T  7568430 aaaagttattttgtttagtcaatagtataactgtcgattttatgtcagctagtg 7568483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42664026 - 42664079
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||| ||||||| ||||||| ||| ||||  |||||||||||||||||||||||    
T  42664026 aaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtg 42664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 51878387 - 51878335
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||  |||||||||||||||||||| ||| |  ||||||||||||||||    
T  51878387 ctctaaaattaaactttaccttattacaattcagtactcatacaaaatattaa 51878335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 27118612 - 27118552
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||    
T  27118612 gtggatcactctaaaactatactttaccttattacaaatcagtcatcatacaaaatattaa 27118552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 15964446 - 15964391
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||    
T  15964446 agaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtg 15964391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 47555020 - 47554977
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  47555020 taaactttaccttattacaaatcagtcatcatacaaaatattaa 47554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 422249 - 422192
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||||| ||||||||| | | || |||||||||||||||||||||||||||||    
T  422249 ctaaactttactttattacaacttagtcctcatacaaaatattaattacttttgattt 422192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 7842434 - 7842378
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||    
T  7842434 taaactttatcttattacaaatcaatcctcgtaaaaaatatttattacttttgattt 7842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 16135597 - 16135544
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaat 132  Q
    ||||||| |||||||||||| |||||||||||| |  |||||||||||||||||    
T  16135597 ctctaaaactaaactttaccctattacaaatcagttctcatacaaaatattaat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 13876693 - 13876745
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||  |  ||||||||||||||||    
T  13876693 ctctaaaactaaactttaccttattacaaatcggtactcatacaaaatattaa 13876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 15964374 - 15964322
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||| ||||||||||||||||||| || ||||| ||||||||||    
T  15964374 ctctaaaactaaattttaccttattacaaatcagtcctcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 3120645 - 3120688
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||||||||||||||||||| || |||||||| |||||||    
T  3120645 taaactttaccttattacaaatcagtcctcatacaatatattaa 3120688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 28012968 - 28012917
Alignment:
Q  88 taaactttaccttattacaaatcaatcatcatacaaaatattaattactttt 139  Q
    |||||||||||||||||||||||| || || || ||| ||||||||||||||    
T  28012968 taaactttaccttattacaaatcagtcctcgtaaaaactattaattactttt 28012917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 25943464 - 25943420
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||| |||| |||||||||||||| ||||| |||||||||||||    
T  25943464 ctaaattttatcttattacaaatcagtcatcgtacaaaatattaa 25943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 66036 - 65979
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    |||||||||||||||||| |||| | || |||||||||||||||||||||||||||||    
T  66036 ctaaactttaccttattataaattagtcctcatacaaaatattaattacttttgattt 65979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 24584 - 24644
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||| | ||||||||||||||||||||||||| ||||| |||||||||||||    
T  24584 gtggatcactctagaactaaactttaccttattacaaatcagtcatcgtacaaaatattaa 24644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 4104290 - 4104238
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  4104290 ctctaaaactaaactttgccttattacaaatcaatcttcatacaaaatattaa 4104238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 6613775 - 6613819
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||    
T  6613775 ctaaacttcaccttattacaaatgaatcctcatacaaaatattaa 6613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 18306669 - 18306709
Alignment:
Q  93 tttaccttattacaaatcaatcatcatacaaaatattaatt 133  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  18306669 tttaccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 34994175 - 34994122
Alignment:
Q  20 aaaaattattttgtttagtcgataatataactgttgatgtcatgtcagctagtg 73  Q
    |||||||||||||||||| | |||  |||| ||||||||||||||| |||||||    
T  34994175 aaaaattattttgtttagccaatataataagtgttgatgtcatgtcggctagtg 34994122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 8323 - 8380
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||||||| ||||||||| | | || |||||||||||||||||||||||||||||    
T  8323 ctaaactttactttattacaacttagtcctcatacaaaatattaattacttttgattt 8380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 5880 - 5811
Alignment:
Q  62 tgtcagctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    |||| ||||||||| | ||||||| |||||||||||||||||| |||||| |  ||||||||||||||||    
T  5880 tgtctgctagtggaccactctaaaactaaactttaccttattataaatcagttctcatacaaaatattaa 5811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 4618529 - 4618581
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||    
T  4618529 ctctaaaactaaactttatcttactacaaatcagtcatcatacaaaatattaa 4618581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 22955086 - 22955138
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| |  ||||||||||||||||    
T  22955086 ctctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaa 22955138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 40382163 - 40382111
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  40382163 ctctaaaactaaactttaccttattacaaatcagtccgcatacaaaatattaa 40382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 49002498 - 49002446
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||    
T  49002498 ctctaaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 4902594 - 4902542
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||| | |  ||||||||||||||||    
T  4902594 ctctaaaactaaactttaccttattacaaattagtactcatacaaaatattaa 4902542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 7743276 - 7743224
Alignment:
Q  18 agaaaaattattttgtttagtcgataatataactgttgatgtcatgtcagcta 70  Q
    |||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||||    
T  7743276 agaaaagttattttgtttagtcaatagtataactgtcgatgtcatgtcggcta 7743224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 8133333 - 8133385
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||||||||||||||||||||| || ||||  ||||||||||    
T  8133333 ctctaaaactaaactttaccttattacaaatcagtcttcatgtaaaatattaa 8133385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 10675025 - 10675085
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| ||||||  ||||||||||| ||||||||||| | || ||||||||||||||||    
T  10675025 gtggatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 23402146 - 23402198
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||| | |||||||||||| ||||| |||||||||||||    
T  23402146 ctctaaaactaaactttatcctattacaaatcagtcatcgtacaaaatattaa 23402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 7743204 - 7743152
Alignment:
Q  79 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 131  Q
    ||||||| |||||||||||||||||||||| ||  | ||||| ||||||||||    
T  7743204 ctctaaaactaaactttaccttattacaaagcagccctcatataaaatattaa 7743152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 108009 - 107936
Alignment:
Q  71 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 144  Q
    ||||||| ||||||  ||||||||| ||||||||||||||| || ||||| |||| || |||||||||| ||||    
T  108009 gtggatcactctaagtctaaacttttccttattacaaatcagtcttcatagaaaacataaattacttttaattt 107936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 11455 - 11505
Alignment:
Q  87 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattactt 137  Q
    ||||| |||| |||||||||||||| || |||||||||||| |||||||||    
T  11455 ctaaattttatcttattacaaatcagtcctcatacaaaataataattactt 11505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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