View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_48 (Length: 221)
Name: NF11127_high_48
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 37054033 - 37054217
Alignment:
| Q |
20 |
acacgttcatgatcatcaaaacaagtgatgaagacggataggaattccctctgttggtataggtatcaaagcgccagatacttcctcatcaggaagcata |
119 |
Q |
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| T |
37054033 |
acacgttcatgatcatcaaaacaagtgatgaagacggataggaattccctctgttggtataggtatcatagcaccagatacttcctcatcaggaagcata |
37054132 |
T |
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| Q |
120 |
acttcccatttgaactttgttacaagattgtgaatgaaagtgagaatcgcaagccgtgtgtaatcctttccaggacaagatcttg |
204 |
Q |
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| T |
37054133 |
acttcccatttgaactttgttacaagattgtgaatgaaagtgagaatcgcaagccgtgtgtaatcctttccaggacaagatcttg |
37054217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 13102144 - 13102017
Alignment:
| Q |
43 |
agtgatgaagacggataggaattccctctgttggtataggtatcaaagcgccagatacttcctcatcaggaagcataacttcccatttgaactttgttac |
142 |
Q |
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|||||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102144 |
agtgatgaagacagataggaattccctatattggtataggtatcaaagcaccatatacttcctcatcaggaagcataacttcccatttgaactttgttat |
13102045 |
T |
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| Q |
143 |
aagattgtgaatgaaagtgagaatcgca |
170 |
Q |
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| T |
13102044 |
aagattgtgaatgaaagtgagaatcgca |
13102017 |
T |
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