View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_high_49 (Length: 204)
Name: NF11127_high_49
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 37080453 - 37080634
Alignment:
| Q |
4 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
103 |
Q |
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| T |
37080453 |
tatctcctttattatccttttgatttatcattttatcaagttcgcaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccattgta |
37080552 |
T |
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| Q |
104 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctct |
185 |
Q |
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| T |
37080553 |
tgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctct |
37080634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 37070620 - 37070799
Alignment:
| Q |
4 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
103 |
Q |
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| T |
37070620 |
tatctcctttcttatccttttgatttatcatcttatgaagttcaggaattcgacgactttgcagcagtatgtgttgtactagctcatgctttccattttt |
37070719 |
T |
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| Q |
104 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttct |
183 |
Q |
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| T |
37070720 |
tgctgcaacatgaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttct |
37070799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 36953814 - 36953641
Alignment:
| Q |
4 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
103 |
Q |
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| T |
36953814 |
tatctcctttattatctttttgatttatcatcttataacgttcactactttgact------ttgtagaatgtattgcaccacctcatattttccatagtt |
36953721 |
T |
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| Q |
104 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttct |
183 |
Q |
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| T |
36953720 |
tgatgcaatgtgaagaatattacgctcatgagaagtgtcaagcatctctgtgggatcaggacaatattccaacaacttct |
36953641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 12494432 - 12494603
Alignment:
| Q |
4 |
tatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggta |
103 |
Q |
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| T |
12494432 |
tatctcctttattatctttttgatttatcatcttatcaagtccaggaatttgact------ttgtagaatgtattgcaccacctcatattttccatattt |
12494525 |
T |
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| Q |
104 |
tgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaactt |
181 |
Q |
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|| ||| ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
12494526 |
tgatgcaacatgaagaatattacgtttatgagaagtgtcaagcatctctgtgggatcaggacaatattctaacaactt |
12494603 |
T |
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