View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_high_8 (Length: 506)
Name: NF11127_high_8
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_high_8 |
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| [»] scaffold1749 (1 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 6472783 - 6473270
Alignment:
| Q |
1 |
ttccaaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaattaattgaaaagttcagtgaaatttt |
100 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
6472783 |
ttccaaatcatcacatgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagagccaaaaattaattgaaaagttcattgaaatttt |
6472882 |
T |
|
| Q |
101 |
gttagtataaacttaaaagtgttgatca--acttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgt |
198 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6472883 |
gttagtataaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgt |
6472982 |
T |
|
| Q |
199 |
gttagggctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgta |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6472983 |
gttagggctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgta |
6473082 |
T |
|
| Q |
299 |
cctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtgga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6473083 |
cctcagatggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtgga |
6473182 |
T |
|
| Q |
399 |
agaagcatagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttccccctttt |
486 |
Q |
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| T |
6473183 |
agaagcatagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtaggagctcagatgatatgtttccccctttt |
6473270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 108 - 486
Target Start/End: Complemental strand, 13608756 - 13608378
Alignment:
| Q |
108 |
taaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggct |
207 |
Q |
| |
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||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13608756 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
13608657 |
T |
|
| Q |
208 |
cccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcagatg |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||| |||| ||||||||| |||||| |
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| T |
13608656 |
cccctccatctttgcacttcctctaagttttctttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatg |
13608557 |
T |
|
| Q |
308 |
gactcacatcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagcata |
407 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||| | | | |||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
13608556 |
gactcgcatcatagaaaataggtagaacagtttgtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtggaagaagcata |
13608457 |
T |
|
| Q |
408 |
gttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttccccctttt |
486 |
Q |
| |
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|||| ||||||| || |||||||| ||||| ||| ||| || |||||| ||||| |||||||||| | |||||||| |
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|
| T |
13608456 |
gtttcttgagaagataacaatcaaaatatgggatccttcaatggcttgttcaagcttggatgatatatgttcccctttt |
13608378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13608941 - 13608867
Alignment:
| Q |
1 |
ttccaaattatcacttgaaaaccacgaacataaataacaaagattaattgataaaacaattcaagaaccaaaaat |
75 |
Q |
| |
|
|||||||| ||||| ||| |||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
13608941 |
ttccaaatcatcacatgacaaccacaaacaaaaacaacaaagattaattgataaaacaatccaagaaccaaaaat |
13608867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 106 - 485
Target Start/End: Complemental strand, 31244738 - 31244358
Alignment:
| Q |
106 |
tataaacttaaaa-gtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagg |
204 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||||||||| |||||||||| |||| ||| ||||||||||||||| | ||||||||||| |||| |
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| T |
31244738 |
tataaacttaaaaagttatgatcgacttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagg |
31244639 |
T |
|
| Q |
205 |
gctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcag |
304 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||| |||| || ||||| |||||||||||||||| |||| ||||| ||||||| |
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|
| T |
31244638 |
gctcctctccatctttgcactttctctaaatttcctttgaatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcag |
31244539 |
T |
|
| Q |
305 |
atggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatacaatcagcaatatttgccaattcttgcaagcaccatgtggaagaagc |
404 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||| ||| | || || |||||||| ||| | | ||| | ||||||||| || |||||||| |
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| T |
31244538 |
atggatccacatcatagaaaataggtagaacaatttgtcctgttacttcaatgcattcagcaatctttactagttccttcaagcaccacgttgaagaagc |
31244439 |
T |
|
| Q |
405 |
atagttttttgagaaaattacaatcaagatatgagattcttttatagcttgtagaagctcagatgatatatttcccccttt |
485 |
Q |
| |
|
|||||| |||| || || |||||||| ||| | ||| ||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
31244438 |
atagttccttgaaaagataacaatcaaaatacgggatccttcaatagcttgtagaagctcagatgatatattttccccttt |
31244358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 31244864 - 31244823
Alignment:
| Q |
36 |
aacaaagattaattgataaaacaattcaagaaccaaaaatta |
77 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31244864 |
aacaaaaattaattgataaaacaattcaagaaccaaaaatta |
31244823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 31150836 - 31150889
Alignment:
| Q |
171 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
224 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || ||| |||||||||||||||| |
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|
| T |
31150836 |
atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcac |
31150889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 31496595 - 31496522
Alignment:
| Q |
151 |
actacttacttatcctttatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
224 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||| || |||||| |||| ||| |||||||||||||||| |
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|
| T |
31496595 |
actatttacttatcatgtagatcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcac |
31496522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 31159732 - 31159784
Alignment:
| Q |
169 |
atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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|
| T |
31159732 |
atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
31159784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 31159937 - 31159991
Alignment:
| Q |
374 |
ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat |
428 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||||||||||||||||| | |||||| |
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|
| T |
31159937 |
ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat |
31159991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 107 - 345
Target Start/End: Original strand, 17599599 - 17599843
Alignment:
| Q |
107 |
ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc |
206 |
Q |
| |
|
|||||||||||||||||||| | |||| || |||||||||||||| ||||||| ||||||||||| ||| || || ||||||||||||| |||| ||| |
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|
| T |
17599599 |
ataaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgagttaaggc |
17599696 |
T |
|
| Q |
207 |
tcccctccatctttgcactgcctctaagtttcctttgaatctttc--------tccatgctcaagaaagggtttttcataatctccggtttgttttcgta |
298 |
Q |
| |
|
||||||||| |||||| ||||||| ||| ||||||||||| | | |||||| |||| | ||||||||||| |||| ||| ||||||| |
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|
| T |
17599697 |
acccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgta |
17599796 |
T |
|
| Q |
299 |
cctcagatggactcacatcatagaaaataggtagaacagtttgtcct |
345 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17599797 |
cctcagatggactcccgtcatagaaaataggtagaacagtttgtcct |
17599843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 345
Target Start/End: Complemental strand, 14724251 - 14724007
Alignment:
| Q |
107 |
ataaacttaaaagtgttgatcaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttagggc |
206 |
Q |
| |
|
||||||||||||| |||||| | |||| || |||||||||||||| ||||||| ||||||||||| ||| || || ||||||||||||||| || ||| |
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|
| T |
14724251 |
ataaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagcc--agggattggctacttgtgctaaggc |
14724154 |
T |
|
| Q |
207 |
tcccctccatctttgcactgcctctaagtttcctttgaatctttc--------tccatgctcaagaaagggtttttcataatctccggtttgttttcgta |
298 |
Q |
| |
|
|||||||||| |||||| ||||||| ||| ||||||||||| | | |||||| |||| | ||||||||||| |||| ||| ||||||| |
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|
| T |
14724153 |
tcccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgta |
14724054 |
T |
|
| Q |
299 |
cctcagatggactcacatcatagaaaataggtagaacagtttgtcct |
345 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
14724053 |
cctcagatggactcccgtcatagaaaataggtagaacaatttgtcct |
14724007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 812 - 852
Alignment:
| Q |
376 |
aattcttgcaagcaccatgtggaagaagcatagttttttga |
416 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
812 |
aattcttgcaggcaccatgttgaagaagcatagtttcttga |
852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 9573 - 9613
Alignment:
| Q |
376 |
aattcttgcaagcaccatgtggaagaagcatagttttttga |
416 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
9573 |
aattcttgcaggcaccatgttgaagaagcatagtttcttga |
9613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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