View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_low_13 (Length: 469)
Name: NF11127_low_13
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 1738234 - 1738009
Alignment:
| Q |
24 |
ttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
123 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1738234 |
ttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa |
1738135 |
T |
|
| Q |
124 |
actaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagt------agtgtatcattg |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
1738134 |
actaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatctagtagtgtaagtgtaccattg |
1738035 |
T |
|
| Q |
217 |
acatcttccacccatttggcttgatt |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1738034 |
acatcttccacccatttggcttgatt |
1738009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 41 - 372
Target Start/End: Complemental strand, 1716829 - 1716485
Alignment:
| Q |
41 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
128 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| | || ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
|
| Q |
129 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatcttccac |
227 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||| || |||||||||||||| | |||||||||||||||||||| | |||||||||| | | |
|
|
| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatcttacgc |
1716630 |
T |
|
| Q |
228 |
ccatttggcttgattgccatgctcatcaaaatgactgtatttcaatacattagcaaatacaaataaattcaccttatttcccacatctagccgaaactc- |
326 |
Q |
| |
|
| |||| ||||| | | ||||||||||||| |||| |||||||||||||||||| ||| |||||| |||||||||||| ||| || || ||||||| |
|
|
| T |
1716629 |
tcgtttgacttgagttctatgctcatcaaaacgactctatttcaatacattagcagataaaaataagttcaccttattttccatatgaagttgaaactct |
1716530 |
T |
|
| Q |
327 |
agactgtttaatttaggttatttcaaaacttaatagttctactcac |
372 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1716529 |
taactgtttactttaggttatttcaaaactt-atagttctactcac |
1716485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 1738009 - 1737905
Alignment:
| Q |
338 |
tttaggttatttcaaaacttaatagttctactcactccctgctaaacactagtgcaaatttctcaagtaaaataatcagtcaagaaaatattttcatcaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1738009 |
tttaggttatttcaaaacttaatagttctactaactccctgctaaacactagtgcaaatttcttaagtaaaataaccagtcaagaaaatattttcatcaa |
1737910 |
T |
|
| Q |
438 |
cagat |
442 |
Q |
| |
|
||||| |
|
|
| T |
1737909 |
cagat |
1737905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 33577697 - 33577656
Alignment:
| Q |
269 |
tcaatacattagcaaatacaaataaattcaccttatttccca |
310 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
33577697 |
tcaatacattagcaaataaaactaaaatcaccttatttccca |
33577656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University