View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_14 (Length: 428)
Name: NF11127_low_14
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 41 - 415
Target Start/End: Original strand, 51756024 - 51756398
Alignment:
| Q |
41 |
taacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtg |
140 |
Q |
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| T |
51756024 |
taacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtg |
51756123 |
T |
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| Q |
141 |
gtatacatgccaagatttaacggtgattaatggcaacgttgttaggttttgggatgaagatttcgagtttgcttcctttgcaaatggaggaatcaaataa |
240 |
Q |
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| T |
51756124 |
gtatacatgccaagatttaacggtgattaacggcaacgttgttaggttttgggatgaagagttcgagtttgcttcctttgcaaatggaggaatcaaataa |
51756223 |
T |
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| Q |
241 |
cagcttcagttgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgctatcatcaatgtatata |
340 |
Q |
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| T |
51756224 |
cagcttcagctgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgttatcatcaatgtatata |
51756323 |
T |
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| Q |
341 |
tggtggtgggttaattaatttggataacatatatcatgataagttgatatataatcctctcctcattcatgctct |
415 |
Q |
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| T |
51756324 |
tggtggtgggttaattaatttggataatatatatcatgataagttgatatataatcatctcctcattcatgctct |
51756398 |
T |
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