View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_16 (Length: 418)
Name: NF11127_low_16
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 28589167 - 28588744
Alignment:
| Q |
8 |
aagcagagacagttttgttagtgatcttgagaagaatcatacattagataagatataatgtgaaaatttgtttataataagtgtatgtttaattttactt |
107 |
Q |
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| T |
28589167 |
aagcaaagacagttttgttagtgatcttgagaagaatcatacattagataagatataatgtgaaaatttgtttataataagtgtatgtttagttttactt |
28589068 |
T |
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| Q |
108 |
ggaggtgtaatattgattttagaggagtacaactgaatttagttgaatgctataatttattgttcaactcatttttatatgagtgcatccaaagataaaa |
207 |
Q |
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| T |
28589067 |
ggaggtgtaatattgattttagaggagtacaattgaatttagttgaatgctataatttattgttcaactcattttcatatgagtgcatccaaagataaaa |
28588968 |
T |
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| Q |
208 |
cgctttacataatttatttttagtcaaaat--------------caatttattcaaaatcagatttgtcacagtagaatcaagcatacattaagtgggag |
293 |
Q |
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| T |
28588967 |
cgctttacataatttatttttagtcaaaatcaatcttataaaatcaatttattcaaaatcagatttgtcacagtagaatcaagcatatattaaatgggag |
28588868 |
T |
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| Q |
294 |
ttatcatcccttatcttatgagataattttgtgagatggagtt--atcata-------------catgaatttgtcaagttcattactcattcgaacaca |
378 |
Q |
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| T |
28588867 |
ttatcatcccttatcttatgagctaattttgtgagatggagttcgttcaaactcagtgagccaccatgaatttgtcaagttcattactcattcgaataca |
28588768 |
T |
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| Q |
379 |
cacgctaggatagtatcaaagttt |
402 |
Q |
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| T |
28588767 |
cacgctaggatagtatcaaagttt |
28588744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 43628178 - 43628223
Alignment:
| Q |
161 |
aatttattgttcaactcatttttatatgagtgcatccaaagataaa |
206 |
Q |
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| T |
43628178 |
aatttattgttcaactcgtatttatatgaatgcatccaaatataaa |
43628223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 17111905 - 17112000
Alignment:
| Q |
161 |
aatttattgttcaactcatttttatatgagtgcatccaaagataaaacgctttacata--atttatttttagtcaaaatcaatttattcaaaatca |
254 |
Q |
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| T |
17111905 |
aatttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaattcactcaaaatca |
17112000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 43521020 - 43521048
Alignment:
| Q |
161 |
aatttattgttcaactcatttttatatga |
189 |
Q |
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| T |
43521020 |
aatttattgttcaactcatttttatatga |
43521048 |
T |
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