View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_17 (Length: 416)
Name: NF11127_low_17
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_17 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 4690728 - 4691129
Alignment:
| Q |
14 |
agagaggataagaagggtcaaccacccaacttcctacgaacaaattgcacccatttgttactactggctttttccctcttaagctacttacattatggaa |
113 |
Q |
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| T |
4690728 |
agagaggataagaagggtcaaccacccaacttcctatgaacaaattgcacccatttgttactactggctttttccctcttaagctacttacattatggaa |
4690827 |
T |
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| Q |
114 |
ctttgcttcaccaagtagaagttgatgaaaaagtgagaatagaagaagcagagtaattgctctgaaacccatttgagatttgccttgaattgaatgaaac |
213 |
Q |
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| T |
4690828 |
ctttgcttcaccaagtagaagttgatgaaaaagtgagaatagaagaagcagagtaattgctctgaaacccatttgagatttgccttgaattgaatgaaac |
4690927 |
T |
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| Q |
214 |
ttgtgtgctcttgtgggtcatatatgtaatgtatgatggaaaagtagtacttagtcggttctattggtgtggtgggtgatattggacactgatttattta |
313 |
Q |
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| T |
4690928 |
ttgtgtgctcttgtgggtcatatatgtaatgtatgatggaaaagtagtacttagtcggttctattggtgtggtgggtgatattggacactgattt-ttta |
4691026 |
T |
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| Q |
314 |
tttatttttgggattgtgacaaagggttttgggtggattagtttgtttgtgtagagctatcataagtttgaaaattgacgagattgtttttatggggaaa |
413 |
Q |
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| T |
4691027 |
tttatttttgggattgtgacaaagggttttggatggattagtttgtttgtgtagagctatcataagtttgaaaattgaagagattgtttttatggggaaa |
4691126 |
T |
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| Q |
414 |
ctc |
416 |
Q |
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| T |
4691127 |
ctc |
4691129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 416
Target Start/End: Original strand, 33636606 - 33636750
Alignment:
| Q |
265 |
tagtcggttctattggtgtggtgggtgatattggacactgatttatttatttatttttgggattgtgacaaagggttttgggtggattagtttgtttgtg |
364 |
Q |
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| T |
33636606 |
tagtcggttctcatgatgtggtgggtgatgttggacattggtttttat-tttatttttgggattgtgacaaagggatttggatgga----tttgtttgtg |
33636700 |
T |
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| Q |
365 |
tagagctatcataagtttgaaaattgacgagattgtttttatggggaaactc |
416 |
Q |
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| T |
33636701 |
tagagctatc--aagtttgatcacagaagagattgtttttatggggaaactc |
33636750 |
T |
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