View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_19 (Length: 375)
Name: NF11127_low_19
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 187 - 354
Target Start/End: Complemental strand, 40736217 - 40736050
Alignment:
| Q |
187 |
tttgtttactaaaaaatcttttaacaaagcaaacccgtgtctttgttgttcagagattagggttatcaaattgaattgaattcaaggttatgttaatcaa |
286 |
Q |
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| T |
40736217 |
tttgtttactaaaaaatcttttaacaaggcaaacccgtgtctttgttgttcagagattagggttatcaaattgaattcaattcaaggttatgttaatcaa |
40736118 |
T |
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| Q |
287 |
cgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatgattcgctcat |
354 |
Q |
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| T |
40736117 |
cgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcattgagaatgattcgctcat |
40736050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 40736389 - 40736277
Alignment:
| Q |
14 |
agaggatatttgaggaaggattgacaaaaataaagagagtttgtcgcccatttaggccttagaaagttcgatggattagtctcctcaagttgcgcgcgaa |
113 |
Q |
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| T |
40736389 |
agaggatatttgaggaaggattgacaaaaataaagagagtttgtcgcccatttacgccttagaaagttcgatggattagtctccgcaagttgcgcgcgaa |
40736290 |
T |
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| Q |
114 |
agatagttggttt |
126 |
Q |
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| T |
40736289 |
agatagttggttt |
40736277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 33004154 - 33004085
Alignment:
| Q |
276 |
atgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatga |
345 |
Q |
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| T |
33004154 |
atgttaatcaatgcttcctccagaatgaatctctccaatggcttgaggcttccttcatcttccagaatga |
33004085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 345
Target Start/End: Original strand, 37469588 - 37469674
Alignment:
| Q |
259 |
gaattgaattcaaggttatgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatga |
345 |
Q |
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| T |
37469588 |
gaattaaattcaaggttatgttaatcaacgcttcctccagaatgaatctcgcctacagtatgaggcttccttcatcctccagaatga |
37469674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 37469664 - 37469708
Alignment:
| Q |
293 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcatc |
337 |
Q |
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| T |
37469664 |
ctccagaatgaatctctccaatggcgcgaggcttcgctcatcatc |
37469708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 17595049 - 17594991
Alignment:
| Q |
276 |
atgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatc |
334 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
17595049 |
atgttaatcaacgcttcctccaagatgaatctctcgtatggcgtgacgcttccttcatc |
17594991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 17594990 - 17594946
Alignment:
| Q |
293 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcatc |
337 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
17594990 |
ctccagtatgagtctctccaatggcgtgaggcttcgctcatcatc |
17594946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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