View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_20 (Length: 367)
Name: NF11127_low_20
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27131930 - 27132153
Alignment:
| Q |
1 |
tcaattgattcagtgtctaaaacgaggtcattctattgagtataaaggatgcaagtcttacaccatatggacaatgtcattttcagcatttgattaataa |
100 |
Q |
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| T |
27131930 |
tcaactgattcagtgtctaaaacgaggtcattctattgagtataaaggatgcaagtcttacaccatatggacaatgtcatttttagcatttgattaataa |
27132029 |
T |
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| Q |
101 |
attttattattaagttaaatacgaagagacttgttaatctaatggtgataaataaatttatgcacggcataaaaccaattaacttgtgcatg--tttttc |
198 |
Q |
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| T |
27132030 |
---ttattattaagttaaatacgaagagacttgttaatctaatggtgataaataaatttatgcatggcataaaaccaattaacttgtgcatgtttttttt |
27132126 |
T |
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| Q |
199 |
taatcttaataataattcatttcatta |
225 |
Q |
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|||||||| ||||| |||||||||||| |
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| T |
27132127 |
taatcttagtaatagttcatttcatta |
27132153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 350
Target Start/End: Complemental strand, 24145998 - 24145875
Alignment:
| Q |
225 |
agatcattctaggtggtgctaaacttaaatatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatg |
324 |
Q |
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| T |
24145998 |
agatcattctaggtggttctacacttagacatttttacttcttaatggctaagtaatttacataggcggttataaactattctaggtgattctac--atg |
24145901 |
T |
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| Q |
325 |
tctttttattttatttaatgactaat |
350 |
Q |
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| T |
24145900 |
tctttttattttacttaatgactaat |
24145875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 24151634 - 24151539
Alignment:
| Q |
253 |
atatttttacttcttaatggctaagtaatttacatagacggttataaactattctaggtggttctacatatgtctttttattttatttaatgactaat |
350 |
Q |
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| T |
24151634 |
atatttttacttcttaatggctaagaaatttacataggcggttataaactattctaggtggttctac--atgtctttttattttacttaatgactaat |
24151539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 7490564 - 7490614
Alignment:
| Q |
300 |
actattctaggtggttctacatatgtctttttattttatttaatgactaat |
350 |
Q |
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| T |
7490564 |
actattctaggtggttctgcatatttctttttattttacttagtgactaat |
7490614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 28414767 - 28414698
Alignment:
| Q |
93 |
attaataaattttattattaagtt-aaatacgaagagacttgttaatctaatggtgataaataaatttat |
161 |
Q |
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||||||||||||||||||||| || ||||| ||| |||||| || ||||||| |||| ||||||| |||| |
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| T |
28414767 |
attaataaattttattattaaattaaaatatgaaaagacttattgatctaatagtgaaaaataaacttat |
28414698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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