View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_22 (Length: 346)
Name: NF11127_low_22
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 5655355 - 5655027
Alignment:
| Q |
18 |
tccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaaca |
117 |
Q |
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| T |
5655355 |
tccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaaca |
5655256 |
T |
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| Q |
118 |
ccaaatccatgcttcatagcaccacttgtacattcccctggtgcagcacttggatttgatgacagtaaggaactattctccatgggaaggattgattctc |
217 |
Q |
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| T |
5655255 |
ccaaatccatgcttcatagcaccacttgtacattcccctggtgctgcacttggatttgatgacagtaaggaactattctccatgggaaggattgattctc |
5655156 |
T |
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| Q |
218 |
cgtggcagaatcgatcggcaacaaaagaaaatcacatcaatgtgaataataacaatctagcatttgattttgatgaagagtctgaagctgacttatttga |
317 |
Q |
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| T |
5655155 |
cgtggcagaatcgatcggcaacaaaagaaaatcacatcaatgtgaataataacaatctagcatttgattttgatgaagagtctgaagctgacttatttga |
5655056 |
T |
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| Q |
318 |
aattgtgttggatggttcagaaaaatcac |
346 |
Q |
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| T |
5655055 |
aattgtgttggatggttcagaaaaatcac |
5655027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 47049139 - 47049268
Alignment:
| Q |
18 |
tccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaaca |
117 |
Q |
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|||||| | |||||| || ||||| ||||||||||||||||| || || ||||||||||||| |||||| |||||||| || |||||||| ||||||||| |
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| T |
47049139 |
tccattgtatccaacattagctgctaatatagacattatggtattggtcaattttggacaaaatgcatttaaatatgcaccagcaaatgctcaaagaaca |
47049238 |
T |
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| Q |
118 |
ccaaatccatgcttcatagcaccacttgta |
147 |
Q |
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| T |
47049239 |
ccaaatccatgccttgtatcaccacttgta |
47049268 |
T |
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