View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_23 (Length: 336)
Name: NF11127_low_23
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 41962887 - 41962567
Alignment:
| Q |
1 |
caatcccattgaaaattggatcaacaattttaagagagttcaatgtatcaatatcaaaacctatatgattttcatttgggtcattgaaatgtgggttgaa |
100 |
Q |
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| T |
41962887 |
caatcccattgaaaattggatcaacaattttaagagagttcaatgtatcaatatcaaaacctatatgattttcatttgggtcattgaaatgtgggttgaa |
41962788 |
T |
|
| Q |
101 |
tcgcgtatcgaattcaacggcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagcaatg |
200 |
Q |
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| T |
41962787 |
tcgcgtatcgaattcaacagcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagcaatg |
41962688 |
T |
|
| Q |
201 |
ccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatgg |
300 |
Q |
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| T |
41962687 |
ccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatgg |
41962588 |
T |
|
| Q |
301 |
ggtgtttgtagatgatagcac |
321 |
Q |
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| T |
41962587 |
ggtgtttgtagatgatagcac |
41962567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 1224361 - 1224041
Alignment:
| Q |
1 |
caatcccattgaaaattggatcaacaattttaagagagttcaatgtatcaatatcaaaacctatatgattttcatttgggtcattgaaatgtgggttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224361 |
caatcccattgaaaattggatcaacaattttaagagagttcaatgtatcaatatcaaaacctatatgattttcatttgggtcattgaaatgtgggttgaa |
1224262 |
T |
|
| Q |
101 |
tcgcgtatcgaattcaacggcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaagcaatg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1224261 |
tcgcgtatcgaattcaacagcaataaaatttgtaggaagaccaaatgggcttggtgacgatgttgatgagagattgttgggggaaaggaagaaaacaatg |
1224162 |
T |
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| Q |
201 |
ccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatgg |
300 |
Q |
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| T |
1224161 |
ccatcaccaaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatgg |
1224062 |
T |
|
| Q |
301 |
ggtgtttgtagatgatagcac |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1224061 |
ggtgtttgtagatgatagcac |
1224041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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