View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11127_low_28 (Length: 301)

Name: NF11127_low_28
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11127_low_28
NF11127_low_28
[»] chr5 (3 HSPs)
chr5 (61-144)||(37498572-37498655)
chr5 (221-288)||(37498731-37498798)
chr5 (19-63)||(37498508-37498552)
[»] chr1 (1 HSPs)
chr1 (232-265)||(31321195-31321228)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 37498572 - 37498655
Alignment:
Q  61 tttagcataaatggaggacatagctagaagaaatggtgaaagtaagatgaaaatagaggaagaaagacgatggaagaaccaaag 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37498572 tttagcataaatggaggacatagctagaagaaatggtgaaagtaagatgaaaatagaggaagaaagacgatggaagaaccaaag 37498655  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 37498731 - 37498798
Alignment:
Q  221 ccctctcacaatgtgactcatcatccaatttgccaaattagcggcgctagccattgccacatcatcct 288  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  37498731 ccctctcacattgtgactcatcatccaatttgccaaatcagcggcgccaaccactgccacatcatcct 37498798  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 37498508 - 37498552
Alignment:
Q  19 caaaagaagcatgtgtttgtgaaaatcatggaaattttacagttt 63  Q
    |||||||||||||| |||||||||||||||| |||||||||||||    
T  37498508 caaaagaagcatgtttttgtgaaaatcatgggaattttacagttt 37498552  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 31321228 - 31321195
Alignment:
Q  232 tgtgactcatcatccaatttgccaaattagcggc 265  Q
    ||||||||||||||||||||||||||| ||||||    
T  31321228 tgtgactcatcatccaatttgccaaatcagcggc 31321195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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