View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_29 (Length: 300)
Name: NF11127_low_29
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 3125834 - 3125712
Alignment:
| Q |
19 |
atcattttgtttattgacaacttaaatatgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctactcttcagaatttttctccttgg |
118 |
Q |
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| T |
3125834 |
atcattttgtttattgacaacttaaatatgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctaatcttcagaatttttctccttgg |
3125735 |
T |
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| Q |
119 |
agttttggggtgaacttccttta |
141 |
Q |
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| T |
3125734 |
agttttggggtgaacttccttta |
3125712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 3556199 - 3556321
Alignment:
| Q |
19 |
atcattttgtttattgacaacttaaatatgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctactcttcagaatttttctccttgg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3556199 |
atcattttgtttattgacaacttaaatatgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctaatcttcagaatttttctccttgg |
3556298 |
T |
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| Q |
119 |
agttttggggtgaacttccttta |
141 |
Q |
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| T |
3556299 |
agttttggggtgaacttccttta |
3556321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 3125643 - 3125561
Alignment:
| Q |
210 |
attgtgtgagtgaggcagagttgtagctcagctttttggatataaagggcttgaatacacaacacctactctatcttcatctc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3125643 |
attgtgtgagtgaggcagagttgtagctcagctttttggatataaaggacttgaatacacaacacctactcttgcttcatctc |
3125561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 3556390 - 3556472
Alignment:
| Q |
210 |
attgtgtgagtgaggcagagttgtagctcagctttttggatataaagggcttgaatacacaacacctactctatcttcatctc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
3556390 |
attgtgtgagtgaggcagagttgtagctcagctttttggatataaaggacttgaatacacaacacctactcttgcttcatctc |
3556472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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