View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11127_low_33 (Length: 281)

Name: NF11127_low_33
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11127_low_33
NF11127_low_33
[»] chr6 (3 HSPs)
chr6 (1-183)||(27131504-27131687)
chr6 (201-280)||(27131731-27131811)
chr6 (70-159)||(4036805-4036893)
[»] chr8 (1 HSPs)
chr8 (70-149)||(5973318-5973398)
[»] chr5 (3 HSPs)
chr5 (65-129)||(34425655-34425719)
chr5 (41-129)||(15639206-15639296)
chr5 (65-149)||(2024928-2025010)
[»] chr7 (2 HSPs)
chr7 (43-108)||(7398225-7398291)
chr7 (76-174)||(36903599-36903696)
[»] chr4 (2 HSPs)
chr4 (41-104)||(27111814-27111878)
chr4 (40-104)||(36363129-36363196)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27131504 - 27131687
Alignment:
Q  1 agtgatggtgatggaacgcgataatgcgtgatatcagaattcagagagaaagagaataagaatcttttt--gtgggatagtacttaatagtactactgag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||     
T  27131504 agtgatggtgatggaacgcgataatgcgtgatatcagaattcagagagaaagagaataagaatcttttttagtggggtagtacttaacagtactactgaa 27131603  T
Q  99 ctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcacctcaaagtccggccctgcacacta 183  Q
    |||||||||||||||||||| ||||||||| |||| | |||||| ||||||  ||||||||| ||||||||||||||| ||||||    
T  27131604 ctataaatttattatgagacccataccttgaagaggctcagctccattgagctttttgcacc-caaagtccggccctgtacacta 27131687  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 27131731 - 27131811
Alignment:
Q  201 aacttgtgagtattcaactaatacttctcaacaatgatatta-ttttttccaaataactatgccatcatggattgtgaatt 280  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  27131731 aacttgtgagtattcaactaatacttctcaacaatgatattatttttttccaaataactatgccatcatggattctgaatt 27131811  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 4036893 - 4036805
Alignment:
Q  70 gtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcac 159  Q
    ||||||||||||||| ||||||||||| ||||| ||||| || |||| ||||||| |||| ||| | || ||| ||||||  ||||||||    
T  4036893 gtgggatagtacttagtagtactactgggctat-aattttttttgaggctcatacattggggaggcccaactccattgagcgttttgcac 4036805  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 5973318 - 5973398
Alignment:
Q  70 gtgggatagtacttaatagtactactgagctataa-atttattatgagactcataccttggagagacgcagctctattgag 149  Q
    ||||| |||||||||||| ||||||||||||||||  |||||| | |||| |||||||||| ||| | |||||| ||||||    
T  5973318 gtggggtagtacttaataatactactgagctataatttttattttaagacccataccttggggaggcccagctccattgag 5973398  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 34425719 - 34425655
Alignment:
Q  65 tttttgtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttgg 129  Q
    |||| ||||| ||||||||| || |||||||| ||||||||||| || ||| |||||||||||||    
T  34425719 ttttagtggggtagtacttagtaatactactgggctataaattttttttgaaactcataccttgg 34425655  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 15639296 - 15639206
Alignment:
Q  41 tcagagagaaagagaataag-aatcttttt-gtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttgg 129  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||||||| |||||||||||  |||||| ||| || | || | ||||||||||    
T  15639296 tcagagagaaagagaataagtaatttttttagtggggtagtacttagtagtactactggactataattttttttttaggcccataccttgg 15639206  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 2024928 - 2025010
Alignment:
Q  65 tttttgtgggatagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgag 149  Q
    |||| ||||| ||||||||| ||||||||||| |||||||  || || | |||| |||||||||| ||| ||||| |||||||||    
T  2024928 ttttagtggggtagtacttagtagtactactgggctataa--ttttttttagacccataccttggggaggcgcagttctattgag 2025010  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 7398291 - 7398225
Alignment:
Q  43 agagagaaagagaataagaatctttttgtggga-tagtacttaatagtactactgagctataaattt 108  Q
    ||||||||||| ||||||||| |||||  |||  ||||||||| ||||||||||| |||||||||||    
T  7398291 agagagaaagaaaataagaattttttttagggggtagtacttagtagtactactgggctataaattt 7398225  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 36903599 - 36903696
Alignment:
Q  76 tagtacttaatagtactactgagctataaatttattatgagactcataccttggagagacgcagctctattgagtcttttgcacctcaaagtccggccc 174  Q
    ||||||||| |||||||||||  |||||| |||||| | ||||| ||||||||||||| | |||||| ||||||   |||||||| |||  ||||||||    
T  36903599 tagtacttagtagtactactggactataa-tttatttttagacttataccttggagaggcccagctcaattgagctctttgcaccccaagatccggccc 36903696  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 27111878 - 27111814
Alignment:
Q  41 tcagagagaaagagaataagaatctttttg-tgggatagtacttaatagtactactgagctataa 104  Q
    ||||||| |||||||||||| || |||||  |||| ||||||||| ||||||||||| |||||||    
T  27111878 tcagagataaagagaataaggatttttttaatggggtagtacttagtagtactactgggctataa 27111814  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 36363129 - 36363196
Alignment:
Q  40 ttcagagagaaagagaataa-gaatcttttt--gtgggatagtacttaatagtactactgagctataa 104  Q
    |||| ||||||||||||||| |||| |||||  ||||| ||||||||| |||||||||||| ||||||    
T  36363129 ttcaaagagaaagagaataaagaatgttttttagtggggtagtacttagtagtactactgaactataa 36363196  T

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