View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_34 (Length: 280)
Name: NF11127_low_34
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 33225535 - 33225776
Alignment:
| Q |
19 |
acaaagatatttaaatgtataaagaccacatttttaaaaaatggtttacttgtttgtctattgatgttgagacaatattggtgcttgttttaacaaaact |
118 |
Q |
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| T |
33225535 |
acaaagatatttaaatgtataaagaccacatttttaaaaaatggtttacttgtttgtctattgatgttgagacaatattggtgcttgttttaacaaaact |
33225634 |
T |
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| Q |
119 |
actagaggatgtgttattgttcttgatcccacacaaaatttaactatggaaaacgatggaaatgtcaagatcaatgattctcaatgaggttatgacggat |
218 |
Q |
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| T |
33225635 |
actagaggatgtgttattgttcttgatcccacacaaaatttaact----------atggaaatatcaagatcaatgattctcaatgacgttatgacggat |
33225724 |
T |
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| Q |
219 |
ccaattttttgaggaaacaatgaatcaattgaacccaatatcgttgtctctg |
270 |
Q |
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| T |
33225725 |
ccaattttttgaggaaacaatgaatcaattgaacccaatatcgtcgtctctg |
33225776 |
T |
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