View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11127_low_37 (Length: 251)

Name: NF11127_low_37
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11127_low_37
NF11127_low_37
[»] chr5 (17 HSPs)
chr5 (13-238)||(30339488-30339710)
chr5 (13-238)||(30059275-30059497)
chr5 (13-238)||(30398983-30399205)
chr5 (60-238)||(30243335-30243513)
chr5 (55-238)||(30434779-30434962)
chr5 (55-238)||(30748600-30748783)
chr5 (61-238)||(29852262-29852439)
chr5 (13-238)||(30482322-30482544)
chr5 (13-238)||(30678131-30678356)
chr5 (13-238)||(29871104-29871326)
chr5 (70-236)||(4380630-4380796)
chr5 (69-234)||(30205481-30205646)
chr5 (133-235)||(30714400-30714502)
chr5 (86-196)||(30474363-30474473)
chr5 (68-238)||(29709872-29710042)
chr5 (67-228)||(30203119-30203280)
chr5 (84-172)||(30429934-30430022)
[»] chr4 (1 HSPs)
chr4 (20-238)||(20297566-20297784)
[»] chr7 (1 HSPs)
chr7 (13-238)||(26706250-26706472)
[»] chr1 (2 HSPs)
chr1 (133-238)||(7582691-7582796)
chr1 (84-228)||(7098401-7098545)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 30339710 - 30339488
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| ||||||||||||||||||||   |||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30339710 catcccctctgggaaggatgttatt---ccttcaccttcatataagataagctgagtaagaccacggaaggtagagattgacctcagtaactcattgtta 30339614  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctccc 212  Q
    ||| | |  |||  ||||  ||||||||||||||||||||||||||||| |||||||||||    |||||||||  ||||||||||||||||||||||||    
T  30339613 catccctcaacatagaggtctttaagagatggaagacatggcagtccaattttagggcaataggagattgtcaagttagaaagacaaggaaacatctccc 30339514  T
Q  213 ctctttccactttcaataacccctct 238  Q
    ||||||||||||||||||||||||||    
T  30339513 ctctttccactttcaataacccctct 30339488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 30059275 - 30059497
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| |||||||||||||||||||   ||||||||   ||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30059275 catcccctctgggaaggatgttat---tccttcacccccatttacgaaaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgtta 30059371  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctccc 212  Q
    |||||  |||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||  |||   |||  ||||||||||||||||||||||||    
T  30059372 cattccgatacagtgagggatttaagagatggaagacatggcagtccaagtttacggcattcagagatatccaacttagaaagacaaggaaacatctccc 30059471  T
Q  213 ctctttccactttcaataacccctct 238  Q
    ||||||||||||||||||| ||||||    
T  30059472 ctctttccactttcaataaaccctct 30059497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 30398983 - 30399205
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| ||||||||||||||||||||   |||  || || || ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30398983 catcccctctgggaaggatgttatt---cctctaccgtaatctagggaaagctcagtaagaccacggaaggtagagattgacctcagtaactcattgtta 30399079  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctccc 212  Q
    ||| |  |||||  |||| |||||||||||||||||||||||| |||||||||||||||| |  ||||| ||||   |||||||||||||||||||||||    
T  30399080 catcccaatacatagagggatttaagagatggaagacatggcactccaagtttagggcaagctgtgattctcaactcagaaagacaaggaaacatctccc 30399179  T
Q  213 ctctttccactttcaataacccctct 238  Q
    ||||||||||||||||||||||||||    
T  30399180 ctctttccactttcaataacccctct 30399205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 30243513 - 30243335
Alignment:
Q  60 taagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtcc 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||  |||||||||||||||||||||||||||    
T  30243513 taagctgagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcccatacaaagaggtctttaagagatggaagacatggcagtcc 30243414  T
Q  160 aagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctct 238  Q
    |||||||||||| |    |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30243413 aagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataacccctct 30243335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 30434779 - 30434962
Alignment:
Q  55 taggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggc 154  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||| |||||  ||||||||||||||||||||||    
T  30434779 tagggtaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgttacgtccatcgacaccgaggtctttaagagatggaagacatggc 30434878  T
Q  155 agtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctct 238  Q
    ||||||||||||||||| |    |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434879 agtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataacccctct 30434962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 30748600 - 30748783
Alignment:
Q  55 taggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggc 154  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |  |||| |||||||||||||||||||||||    
T  30748600 tagggtaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcccataaatggagggatttaagagatggaagacatggc 30748699  T
Q  155 agtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctct 238  Q
    |||||||||| |||||||||   |||   |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30748700 agtccaagttcagggcaatcccagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataatccctct 30748783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 29852262 - 29852439
Alignment:
Q  61 aagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtcca 160  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||| | ||| ||||||||||||||||||||||||    
T  29852262 aagctttgtaagaccacggaaggtagagattgacctcagtaactcattgttacatcccaatacatggagcagtttcagagatggaagacatggcagtcca 29852361  T
Q  161 agtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctct 238  Q
    |||| ||||||||    |||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29852362 agttcagggcaatatgagattttcaaattagaaagacaaggaaatatcttccctctttccactttcaataacccctct 29852439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 30482322 - 30482544
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| ||||||||||||||||||||   |||||||  ||   |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30482322 catcccctctgggaaggatgttatt---ccttcaccctccattagggtaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgtta 30482418  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagt-agaaagacaaggaaacatctcc 211  Q
    ||| |||  |||  ||||  || ||||||||||||| ||||||||||||||||| ||||||    |||| || |||| ||||||||||||||||||||||    
T  30482419 catccatccacatagaggccttcaagagatggaagagatggcagtccaagtttatggcaatatgagatt-tccaagtaagaaagacaaggaaacatctcc 30482517  T
Q  212 cctctttccactttcaataacccctct 238  Q
    |||||||||||||||||||||||||||    
T  30482518 cctctttccactttcaataacccctct 30482544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 30678356 - 30678131
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| ||||||||||||||||||||   ||   || || |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30678356 catcccctctgggaaggatgttatt---ccgaaaccgttatatagggaaagctgagtaagaccacggaaggtagagattgacctcagtaactcattgtta 30678260  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtcca---agtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatct 209  Q
    ||| |  |||   ||||   ||||||||||||||||||||||||||||   |||||||||||||    |||   |||  |||||||||||||||||||||    
T  30678259 catccccatatctcgagttctttaagagatggaagacatggcagtccaagcagtttagggcaattccagatatccaacctagaaagacaaggaaacatct 30678160  T
Q  210 cccctctttccactttcaataacccctct 238  Q
    |||||||||||||||||||||||||||||    
T  30678159 cccctctttccactttcaataacccctct 30678131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 29871104 - 29871326
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| |||||||||||||||||||   |||||||| ||||  ||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  29871104 catcccctctgggaaggatgttat---tccttcaccgtcacttagggcaagctgagtaagaccacaaaaggtagagattgacctcagtaactcattgtta 29871200  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctccc 212  Q
    |||  ||   || |||||  ||||||||||||||||||||||||||||| ||||||||| |     ||   |||| ||||||||||||||||||||||||    
T  29871201 catggatcggcaacgaggtctttaagagatggaagacatggcagtccaattttagggcatttccaaatatccaaactagaaagacaaggaaacatctccc 29871300  T
Q  213 ctctttccactttcaataacccctct 238  Q
    ||||||| ||||||||||| ||||||    
T  29871301 ctctttcaactttcaataaaccctct 29871326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 4380630 - 4380796
Alignment:
Q  70 aagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttaggg 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | |  ||| |||||  ||||||||||||| |||||||||||||||||||||||    
T  4380630 aagaccacgaaaggtagagattgacctcagtaactcattgttacatccctcaacaacgaggtgtttaagagatggatgacatggcagtccaagtttaggg 4380729  T
Q  170 caatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccct 236  Q
    ||||    |||   |||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  4380730 caattctagatatccaagttagaaagacaaggaaacaactcccctctttccactttcaataacccct 4380796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 30205481 - 30205646
Alignment:
Q  69 taagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagg 168  Q
    |||||||||  ||| |||||||||||||||| ||||||||||||||| |  ||||| | |||  ||||||||||  ||||||||||||||||||||||||    
T  30205481 taagaccacaaaagctagagattgacctcagcaactcattgttacatcccaatacatctaggtttttaagagatacaagacatggcagtccaagtttagg 30205580  T
Q  169 gcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataaccc 234  Q
    ||||     ||| || |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  30205581 gcaaaaggagatggttaaacgagaaagacaaggaaacatctcacctctttccactttcaataaccc 30205646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 30714502 - 30714400
Alignment:
Q  133 tttaagagatggaagacatggcagtccaagtttagggcaatcaat-gattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataa 231  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||  |||  |||||||| ||||||||||||||||||||||||||||||||||    
T  30714502 tttaagagatggaagacatggcagtccaagtttagggcaa-caatcgattaccaatttagaaagagaaggaaacatctcccctctttccactttcaataa 30714404  T
Q  232 cccc 235  Q
    ||||    
T  30714403 cccc 30714400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 30474363 - 30474473
Alignment:
Q  86 gagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtca 185  Q
    |||||||| ||||||||||||||||||||| || |||||  ||||  |||||| |||||||| |||||||   ||||||||||||||||||| || ||||    
T  30474363 gagattgatctcagtaactcattgttacatccaaatacaatgaggtctttaagggatggaaggcatggcaacacaagtttagggcaatcaataatggtca 30474462  T
Q  186 aagtagaaaga 196  Q
    || ||||||||    
T  30474463 aattagaaaga 30474473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 29710042 - 29709872
Alignment:
Q  68 gtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttag 167  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||| |  | ||| |||||  | ||||||| |||||||||| |||| |||||||||    
T  29710042 gtaagaccacatgaggtagagattgatctcagtaactcattgttacatcccgaaacatcgaggtctataagagacggaagacatgacagttcaagtttag 29709943  T
Q  168 ggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctct 238  Q
     | |       ||| ||||| ||||| |||||||||||| |||| |||||||||| |||| ||||||||||    
T  29709942 tgaagagggcaattttcaaaatagaaggacaaggaaacacctcctctctttccacattcactaacccctct 29709872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 30203119 - 30203280
Alignment:
Q  67 agtaagaccacggaaggtagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagttta 166  Q
    ||||||||||  |||| ||||||| |||||||||||||||||||||||||||| ||||   |||  ||||| | |||||||||||| ||||  |||||||    
T  30203119 agtaagaccatagaagctagagatcgacctcagtaactcattgttacattcatttacataaaggtttttaacatatggaagacatgacagttgaagttta 30203218  T
Q  167 gggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaa 228  Q
    ||| ||     |||   |||   | |||||||||||||||||||| ||||||||||||||||    
T  30203219 gggtaaaaggcgatatccaattgaaaaagacaaggaaacatctcctctctttccactttcaa 30203280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 30429934 - 30430022
Alignment:
Q  84 tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaa 172  Q
    |||||||||||  ||||||||||||||||||| ||| ||||  |||   ||||| ||||| ||| |||||||  ||||||||| |||||    
T  30429934 tagagattgactccagtaactcattgttacatccatctacaatgagttctttaaaagatgaaaggcatggcaacccaagtttaaggcaa 30430022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 20297784 - 20297566
Alignment:
Q  20 tctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgttacattcat 119  Q
    ||||||||||||||||||||| |||||| ||||  ||||  ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||  ||    
T  20297784 tctgggaaggatgttattatttcttcactgtcaagtagggaaagctgagtaagaccacggaaagtagagattgatctcagtaactcattgttacatggat 20297685  T
Q  120 atacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttc 219  Q
      ||| ||||| |||||||||||||||||||||||| ||||||||||||||| |    |||| ||||  |||||||||||||||||||||||||||||||    
T  20297684 cgacatcgagggatttaagagatggaagacatggcattccaagtttagggcatttggagattttcaacttagaaagacaaggaaacatctcccctctttc 20297585  T
Q  220 cactttcaataacccctct 238  Q
    |||||||||||||||||||    
T  20297584 cactttcaataacccctct 20297566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 26706250 - 26706472
Alignment:
Q  13 catcacctctgggaaggatgttattattccttcacggtcatataggataagcttagtaagaccacggaaggtagagattgacctcagtaactcattgtta 112  Q
    |||| ||||||||||||||||||||   ||||| | || ||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  26706250 catcccctctgggaaggatgttatt---ccttcgccgttatatagggtaagctcagtaagaccacgaaaggtagggattgacctcagtaactcattgtta 26706346  T
Q  113 cattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctccc 212  Q
    ||| |  | |||  |||| |||||||||||||||||||||||||||| || ||||||||||     |||||||||  ||||||||||||||||| ||  |    
T  26706347 catcccgaaacattgagggatttaagagatggaagacatggcagtcctagcttagggcaatagtatattgtcaaacgagaaagacaaggaaacacctttc 26706446  T
Q  213 ctctttccactttcaataacccctct 238  Q
    ||||||||||||||||||||||||||    
T  26706447 ctctttccactttcaataacccctct 26706472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 7582796 - 7582691
Alignment:
Q  133 tttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataac 232  Q
    ||||| |||||||||||| || ||| |||||||||||||||   ||||  ||||| |||||||||||||||||||||||  | ||||||||||||| |||    
T  7582796 tttaacagatggaagacacggaagttcaagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcctttttttccactttcaacaac 7582697  T
Q  233 ccctct 238  Q
    ||||||    
T  7582696 ccctct 7582691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 7098401 - 7098545
Alignment:
Q  84 tagagattgacctcagtaactcattgttacattcatatacagcgaggaatttaagagatggaagacatggcagtccaagtttagggcaatcaatgattgt 183  Q
    ||||||||||| |||| | || ||| |||||||||| ||||  ||||  | ||| |||||||||||| || ||| |||||||||||||||    ||||      
T  7098401 tagagattgacttcagcatcttattattacattcatctacatagaggtctctaacagatggaagacacggaagttcaagtttagggcaattgtcgatttc 7098500  T
Q  184 caaagtagaaagacaaggaaacatctcccctctttccactttcaa 228  Q
    |||| ||||||||||||||||| ||||  ||||||||||||||||    
T  7098501 caaaatagaaagacaaggaaacgtctcatctctttccactttcaa 7098545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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