View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_39 (Length: 250)
Name: NF11127_low_39
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37361714 - 37361473
Alignment:
| Q |
1 |
tgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361714 |
tgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagac |
37361615 |
T |
|
| Q |
101 |
tttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361614 |
tttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaa |
37361515 |
T |
|
| Q |
201 |
gtaactcggttgtactattcatcaatacctgtgtcctttgct |
242 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37361514 |
gtaactcagttgtactattcatcaatacctgtgtcctttgct |
37361473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37366347 - 37366588
Alignment:
| Q |
1 |
tgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366347 |
tgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagac |
37366446 |
T |
|
| Q |
101 |
tttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaa |
200 |
Q |
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| T |
37366447 |
tttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaa |
37366546 |
T |
|
| Q |
201 |
gtaactcggttgtactattcatcaatacctgtgtcctttgct |
242 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37366547 |
gtaactcagttgtactattcatcaatacctgtgtcctttgct |
37366588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 37383907 - 37383766
Alignment:
| Q |
2 |
gagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagact |
101 |
Q |
| |
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|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| | |
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| T |
37383907 |
gagctgaaatgattaatctctagtagggttggattcgtgataatttcatatgtggccggatcgattctccgcacatcgcctccatacataaggggagatt |
37383808 |
T |
|
| Q |
102 |
ttgccatagcccacaaagtcatctgtgagataataataaatt |
143 |
Q |
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|||||| |||||||| |||||||||||| |||||||| |||| |
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| T |
37383807 |
ttgccaaagcccacagagtcatctgtgatataataatgaatt |
37383766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 37376545 - 37376298
Alignment:
| Q |
2 |
gagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagact |
101 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||| | |
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| T |
37376545 |
gagctgaaatgattaatctctagtagggtcggattcgtcataatttcatatgtggcaggatcgatcctccgcacatcgcctccatacataagaggagatt |
37376446 |
T |
|
| Q |
102 |
ttgccatagcccacaaagtcatctgtgagataataataaattgatcagaata---tatcataatgcatgc------aagcacataattgcataaaaatat |
192 |
Q |
| |
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|||| | |||||||| |||||||||||| |||||||| |||| | | ||||| ||||||||||||||| || ||||| ||||||| ||| || |
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| T |
37376445 |
ttgcaaaagcccacagagtcatctgtgatataataatgaattca-ctgaatagtctatcataatgcatgcattgcaaaacacatgattgcatggaaagat |
37376347 |
T |
|
| Q |
193 |
ataagaaagtaactcggttgtactattcatca--atacctgtgtccttt |
239 |
Q |
| |
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|||||| |||||||| ||| | ||||| |||| ||||||||||||||| |
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| T |
37376346 |
ataagagagtaactcagttatgctatttatcaatatacctgtgtccttt |
37376298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 37408730 - 37408878
Alignment:
| Q |
29 |
gtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtg |
128 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||| || |
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| T |
37408730 |
gtaggattcgtgataatttcgtatgtggcagggtcgatcttccgcatatcgcctccatacataaggggagactttgccaaagcccataaagtcatctatg |
37408829 |
T |
|
| Q |
129 |
agataataataaattga-tcagaatatatcataatgcatgcaagcacat |
176 |
Q |
| |
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|||||| ||| ||| | ||||| | ||||||||||||||||| ||||| |
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| T |
37408830 |
agataacaatgaatccactcagagtctatcataatgcatgcaatcacat |
37408878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 41228617 - 41228792
Alignment:
| Q |
2 |
gagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagact |
101 |
Q |
| |
|
|||||||||| |||||| || || | ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||| |
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| T |
41228617 |
gagctgaaataattaatttctagcacggtaggatttgtgataatttcatatgtggcagggtcgatcttccgcatgtcacctccatacataaggggagact |
41228716 |
T |
|
| Q |
102 |
ttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
176 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||| ||| |||| | ||| ||| ||||||||||||||||| ||||| |
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|
| T |
41228717 |
ttgccagagcccataaagtcatctatgagataacaatgaattcactcaaaatctatcataatgcatgcaatcacat |
41228792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 39246344 - 39246281
Alignment:
| Q |
65 |
atcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtg |
128 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39246344 |
atcttccgtacatcgcccccatacataaggggagactttgccattgcccacagggtcatctgtg |
39246281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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