View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_4 (Length: 624)
Name: NF11127_low_4
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 26536774 - 26537384
Alignment:
| Q |
1 |
cctccacaaccccatcagattcatgttttctccgagcaagcacttctacttctgttcttggatgttccatatctatatctaaagtttttccttcaagaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536774 |
cctccacaaccccatcagattcatgttttctccgagcaagcacttctacttctgttcttggatgttccatatctatatctaaagtttttccttcaagaac |
26536873 |
T |
|
| Q |
101 |
cacctcactttgtctgttgagatcttgcaacaacgttcttcgataaagagtattttgagcttcagatgtttccttgcaaccatcacggaagatcccgtga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536874 |
cacctcactttgtctgttgagatcttgcaacaacgttcttcgataaagagtattttgagcttcagatgtttccttgcaaccatcacggaagatcccgtgg |
26536973 |
T |
|
| Q |
201 |
tctggaagatgagtgtaatcatctccttggtctgcttccatgtctaaagttggatcgacccatcgaaccttctttcgagcttcattttttaatatctcgt |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
26536974 |
tcaggaagatgagtgtaatcatctccttggtctgcttccatgtctaaagttggatcaatccgtcgaaccttctttcgagcttcattttttaatatctcgt |
26537073 |
T |
|
| Q |
301 |
catctttcnnnnnnncagcaagatcctcatcttcagcagcctcagcagctgctgcaatagcatttttggtactatggagatattcagctttgaagtattt |
400 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537074 |
catctttcaaaaaaacagcaagatcctcatcttcagcagcctcagcagctgctgcaatagcatttttggtactatggagatattcagctttgaagtattt |
26537173 |
T |
|
| Q |
401 |
gttccagaaatctacctcgctcatcttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttatttctcga |
500 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537174 |
gttccagaaatctacctcgctcatgttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttatttctcga |
26537273 |
T |
|
| Q |
501 |
gtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26537274 |
gtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgtgttaactttc |
26537373 |
T |
|
| Q |
601 |
ggctttcatct |
611 |
Q |
| |
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||||||||||| |
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|
| T |
26537374 |
ggctttcatct |
26537384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 267 - 426
Target Start/End: Original strand, 40350892 - 40351051
Alignment:
| Q |
267 |
accttctttcgagcttcattttttaatatctcgtcatctttcnnnnnnncagcaagatcctcatcttcagcagcctcagcagctgctgcaatagcatttt |
366 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
40350892 |
accttctttcgagcttcattttctaatatctcgtcatctttcaaaaaaacagcaagatcttcatcttcagcagcctcggcagctgctgcaatagcatttt |
40350991 |
T |
|
| Q |
367 |
tggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatct |
426 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40350992 |
tggtactatggagatattcagctttaaagtatttgttccagaaatctacctcgctcatct |
40351051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 40349202 - 40349325
Alignment:
| Q |
79 |
ctaaagtttttccttcaagaaccacctcactttgtctgttgagatcttgcaacaacgttcttcgataaagagtattttgagcttcagatgtttccttgca |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
40349202 |
ctaaagtttttccttcaagaaccacctcactttgtctgttgagatcttgcaacaacgttctccgatacagagtattttgagcttcagatgtttccttgct |
40349301 |
T |
|
| Q |
179 |
accatcacggaagatcccgtgatc |
202 |
Q |
| |
|
|||||||||||| ||||| ||||| |
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|
| T |
40349302 |
accatcacggaaaatcccatgatc |
40349325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 541 - 611
Target Start/End: Original strand, 40355494 - 40355564
Alignment:
| Q |
541 |
tagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttcggctttcatct |
611 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40355494 |
tagtaggctttgtgtcgaagatcaaagaatttttaaatccaatcctttgttttaactttcggctttcatct |
40355564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 40350734 - 40350800
Alignment:
| Q |
204 |
ggaagatgagtgtaatcatctccttggtctgcttccatgtctaaagttggatcgacccatcgaacct |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
40350734 |
ggaagatgagtgtaatcatctccttggtctgcttccatgtctagagttggatcgacccgtcgaacct |
40350800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 40348424 - 40348483
Alignment:
| Q |
22 |
catgttttctccgagcaagcacttctacttctgttcttggatgttccatatctatatcta |
81 |
Q |
| |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
40348424 |
catgttttctccgagcaagcgcttctaccgctgttcttggatgttccatatctatatcta |
40348483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 40351165 - 40351224
Alignment:
| Q |
425 |
cttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctg |
484 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
40351165 |
cttactgggtacaaaattgaggaatgcctggtgaactgctggtttgagggcaaaaatctg |
40351224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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