View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_41 (Length: 243)
Name: NF11127_low_41
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 20694301 - 20694091
Alignment:
| Q |
14 |
cataggtccacattaatgcaactaacactcggttagaacttacaaaaatatagaaagattgtatcaaaaagaggttgataaagtaattaaatgtccttgt |
113 |
Q |
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| T |
20694301 |
cataggtccacattaatgcaactaacactcggttagaacttacaaaaatatagaaagattgtatcaaaaagaggttgataaagtaattaaatgtccttgt |
20694202 |
T |
|
| Q |
114 |
acatnnnnnnngtaattaaaggacttattattaattatttactcaaagatatggtaaatcccaactggtcctgcacttttcttctttgtctttgtgcatg |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20694201 |
acataaaaaaagtaattaaaggacttattattaattatttactcaaagatatggtaaatcccaactggtcctgcacttttcttctttgtctttgtgcatg |
20694102 |
T |
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| Q |
214 |
aagaactgatt |
224 |
Q |
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||||||||||| |
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| T |
20694101 |
aagaactgatt |
20694091 |
T |
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