View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_45 (Length: 241)
Name: NF11127_low_45
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37361956 - 37362180
Alignment:
| Q |
1 |
tccttgtgttttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaagaaaaggagaagtgta |
100 |
Q |
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| T |
37361956 |
tccttgtattttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaagaaaaggagaagtgta |
37362055 |
T |
|
| Q |
101 |
tttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggcttttactggcaaacgcatccgttcctgtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37362056 |
tttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggcttttactggcaaacgcatccgttcctgtaaa |
37362155 |
T |
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| Q |
201 |
ggtcaggaattatggagtggaaagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37362156 |
ggtcaggaattatggagtggaaagt |
37362180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37366105 - 37365881
Alignment:
| Q |
1 |
tccttgtgttttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaagaaaaggagaagtgta |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37366105 |
tccttgtattttagtactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaagaaaaggagaagtgta |
37366006 |
T |
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| Q |
101 |
tttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggcttttactggcaaacgcatccgttcctgtaaa |
200 |
Q |
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| T |
37366005 |
tttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcaaatttgtctaaggcttttactggcaaacgcatccgttcctgtaaa |
37365906 |
T |
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| Q |
201 |
ggtcaggaattatggagtggaaagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37365905 |
ggtcaggaattatggagtggaaagt |
37365881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 37408567 - 37408410
Alignment:
| Q |
64 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtc |
163 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| | | ||||||||| | |
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| T |
37408567 |
gctcttggattgcaacgggaagaaaaggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtatatgcaaagacatcagatttagc |
37408468 |
T |
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| Q |
164 |
taaggcttttactggcaaacgcatccgttcctgtaaaggtcaggaattatggagtgga |
221 |
Q |
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| T |
37408467 |
taaggttttccctggcatacacatcagttcctgtcaaggtaaagaagtgtggagtgga |
37408410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 37377773 - 37377877
Alignment:
| Q |
64 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtc |
163 |
Q |
| |
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||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| | | |||||||||| | |
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| T |
37377773 |
gctcttggattgcaacggggagaaacggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtatacgcaaagacatcagatttggc |
37377872 |
T |
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| Q |
164 |
taagg |
168 |
Q |
| |
|
||||| |
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| T |
37377873 |
taagg |
37377877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 37385187 - 37385309
Alignment:
| Q |
66 |
tcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtcta |
165 |
Q |
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||||||||||| | ||| ||||| |||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| | | |||||||||| || |
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| T |
37385187 |
tcttggattgcaacggggagaaacggagaagtgtatttagctttcttcaatctaaatgaacagaagacaccagtatatgcaaagacatcagatttgggta |
37385286 |
T |
|
| Q |
166 |
aggcttttactggcaaacgcatc |
188 |
Q |
| |
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||| ||| |||||| ||||||| |
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| T |
37385287 |
aggttttccctggcagacgcatc |
37385309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 41227672 - 41227534
Alignment:
| Q |
64 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtc |
163 |
Q |
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||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||| ||| ||| ||||| | |
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| T |
41227672 |
gctcttggattgcaacaggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaagacaccaatatatgcaaatatgtcatatttggc |
41227573 |
T |
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| Q |
164 |
taaggcttttactggcaaacgcatccgttcctgtaaagg |
202 |
Q |
| |
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|||| ||| |||||| ||||||| ||||||| |||| |
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| T |
41227572 |
gaaggttttacctggcagacgcatcaattcctgtcaagg |
41227534 |
T |
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