View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_48 (Length: 230)
Name: NF11127_low_48
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5654779 - 5655008
Alignment:
| Q |
1 |
ctcattttttatcaagaagcnnnnnnntgagtgtatacatgttttggtgtctagacataatttcaaatgcgaatgccagagcctatgaaatattgacaca |
100 |
Q |
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| T |
5654779 |
ctcattttttatcaagcagcaaaaaaatgagtgtatacatgttttggtgtctagacataatttcaaatgcgaatgccggagcctatgaaatattgacaca |
5654878 |
T |
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| Q |
101 |
aacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcagacgccaaaaggaacacacttaactgctaaaagaaacaacataattacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5654879 |
aacacgaatactaggtaagacactgatacatacatttgaaaaatgtatcagacgccaaaaggaacacacttaactgctaaaagaaacaacataattacat |
5654978 |
T |
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| Q |
201 |
ttgactatgcaacctttgctgtaacctatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5654979 |
ttgactatgcaacctttgctgtaacctatg |
5655008 |
T |
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