View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11127_low_5 (Length: 580)
Name: NF11127_low_5
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 44802230 - 44802561
Alignment:
| Q |
17 |
atactcaatgtcttggagtaattgctctttaactagataaacaaattaagcataagttacataactgtgtagtagatcttgattctgatactgatatctc |
116 |
Q |
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| T |
44802230 |
atactcaatgtcttggagtaattgctctttaacatgataaacaaattaagcataagttacataactgtgtagtagatcttcattctgatactgatatctc |
44802329 |
T |
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| Q |
117 |
ctttaattttatttgacaacatcatgtcatttaacaaagttcatnnnnnnngagttgatatattaaatcaaaactcatcttagaattttcatcaactaga |
216 |
Q |
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| T |
44802330 |
ctttaattttatttgacaacatcatgtcatttaacaaagttcataaaaaaagagttg----attaaatcaaaactcaatttagaattttcatcaactaga |
44802425 |
T |
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| Q |
217 |
aatgtgcatatatatataaagacaaccagttcaatttcatttcaattcataagatgctatttatgtatgatgctaagataaacatgcatataaaaataaa |
316 |
Q |
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| T |
44802426 |
aatgtgc------atataaagacaaccagttcaatttcatttcaattgataagatgctatttatgtatgatgctaagataaacatgcatataaaaataca |
44802519 |
T |
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| Q |
317 |
cacaatcaaagtgcagcagtaccactaatcaatgctcataat |
358 |
Q |
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| T |
44802520 |
cacaatcaaagtgcagcagtaccattaatcaatgctcataat |
44802561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 352 - 564
Target Start/End: Original strand, 44802582 - 44802794
Alignment:
| Q |
352 |
tcataataaatcaggtatcaaatgttttgcactcgtcggtttcagggttatccttacagtaatcctccaaggggtcagaatccttcttcctatcccttgc |
451 |
Q |
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| T |
44802582 |
tcataataaatcaggtatcaaatgttttgcactcgtcggtttcagggttatccttacagtaatcctccaaggggtcagaatccttcttcctatcccttgc |
44802681 |
T |
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| Q |
452 |
atgactcgctgcagcactgagttcctccacttcatcccatgctgctacgcattctccactaactgggtcatcagcacacgtctcttgtgcactctttatg |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44802682 |
atgactcgctgcagcactgagttcctccacttcatcccatgctgctacgcattctccactaactgggtcatcagcacacgtctcttgtgcactctttatg |
44802781 |
T |
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| Q |
552 |
ctctcttctacct |
564 |
Q |
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|||||||| |||| |
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| T |
44802782 |
ctctcttcaacct |
44802794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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