View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_low_6 (Length: 509)
Name: NF11127_low_6
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 41250004 - 41249522
Alignment:
| Q |
8 |
cagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgagtacattttcaaattttgatgagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41250004 |
cagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgagtatattttcaaattttgatgagt |
41249905 |
T |
|
| Q |
108 |
ttaaagatgaatcgatacaggggtgatttgtaatgtagtgatcctatgatgttttgcatagcatgaaatatacattattcaactggttttttatatgcac |
207 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41249904 |
ttaaagatgaatcgatacaggggggatttgtaatgtagtgatcctctgatgttttgcatagcatgaaatatacattattcaactggttttatatatgcac |
41249805 |
T |
|
| Q |
208 |
acacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaatttgtacgtcttcgccatattgacatgttttac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249804 |
acacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaatttgtacgtcttcgccatattgacatgttttac |
41249705 |
T |
|
| Q |
308 |
tgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgtataggtacatatatacaagaaaaggaatacaaccacgttg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249704 |
tgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtg--taggtacatatatacaagaaaaggaatacaaccacgttg |
41249607 |
T |
|
| Q |
408 |
caagtaccaattatatccaagcaagatatccatgtaatgtactgattagcaaccacgttgtgaacagaggttggggagcatctat |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41249606 |
caagtaccaattatatccaagcaagatatccatgtaatgtactgattagaaaccacgttgtgaacagaggttggggagcatctat |
41249522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University