View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11127_low_7 (Length: 506)

Name: NF11127_low_7
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11127_low_7
NF11127_low_7
[»] chr2 (2 HSPs)
chr2 (83-496)||(11916649-11917071)
chr2 (1-98)||(11916531-11916628)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 83 - 496
Target Start/End: Original strand, 11916649 - 11917071
Alignment:
Q  83 ataataatgccaatgtcattctagtacactagcaacttgtgtggtggaatttatatcaaaaactttatcatcaatgactgaaccgtacttatttgttaca 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11916649 ataataatgccaatgtcattctagtacactagcaacttgtgtggtggaatttatatcaaaaactttatcatcaatgactgaaccgtacttatttgttaca 11916748  T
Q  183 tttgatgttatttttgctttt--tacaaagataagagtaccaaattattttataagcaagctttattagtggttcatattcttatacgagccatctagat 280  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11916749 tttgatgttatttttgcttttattacaaagataagagtaccaaattattttataagcaagctttattagtggttcatattcttatacgagccatctagat 11916848  T
Q  281 aagtggaattaaaaatagtccacgtatatgaatttggaacaagacaatttttaaggtccacagcatgatgttgttgagaaaatcattataaaattgatat 380  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  11916849 aagtggaattaaaaatagtccacgtatatgaatctggaacaagacaatttttaaggtccacagcatgatgttgttgagaaaatcattataaaattg--at 11916946  T
Q  381 tctcacaacatacataattggtcacttatagttcact-------------tgtgcctaattcctcacattgtgcaacaacaacaaaatgttgcttcctat 467  Q
    |||||||    ||||||||||||||||||||||||||             ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  11916947 tctcaca----acataattggtcacttatagttcacttgtatttttcttctgtgcctaatttctcacattgtgcaacagcaacaaaatgttgcttcctat 11917042  T
Q  468 tgttgtgttgctttctctcttttcctttg 496  Q
    |||||||||||||||||| ||| ||||||    
T  11917043 tgttgtgttgctttctctttttccctttg 11917071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11916531 - 11916628
Alignment:
Q  1 ttattgatttaatgtccctttcatgaaatcaaagatattggcaagggaagttaatgcagattggtagaaagtaactactcatataataatgccaatgt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11916531 ttattgatttaatgtccctttcatgaaatcaaagatattggcaagggaagttaatgcagattggtagaaagtaattactcatataataatgccaatgt 11916628  T

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