View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11127_low_9 (Length: 504)
Name: NF11127_low_9
Description: NF11127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11127_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 35632805 - 35632335
Alignment:
| Q |
1 |
agaagcaatggagccaagtccaatagattagattagattagggaccacatgagaaaagggagtggaagttcaacccataacataactagttagaacgcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632805 |
agaagcaatggagccaagtccaatagattagattag-----ggaccacatgagaaaagggagtggaagttcaacccataacataactagttagaacgcgt |
35632711 |
T |
|
| Q |
101 |
tttttgtgctgtgtttggcttttgctacatttctatttctataatgtttttgattgataaatgcttaactatgagtgggtcgtagttgggtgacagacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632710 |
tttttgtgctgtgtttggcttttgctacatttctatttctataatgtttttgattgataaatgcttaactatgagtgggtcgtagttgggtgacagacag |
35632611 |
T |
|
| Q |
201 |
caagatatgttatgnnnnnnnnctgagtcagccttcaattatttatgacacctttgaaacttgaaagcatacttttcttctctcttcttctattgtcaca |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35632610 |
caagatatgttatgttttttttctgagtcagccttccattatttatgacacctttgaaacttgaaagcatacttttcttctc---tcttctattgtcaca |
35632514 |
T |
|
| Q |
301 |
cgaggctagcacttgtgtgtgttgaaaaacaaagtaaagtactgaatattgatgatgaatcaccacacttttgacgtagtcatacatacactattttggt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35632513 |
cgaggctagcacttgtgtgtgttgaaaaacaaagtgaagtac-------tgatgatgaatcaccacacttttgacgtagtcatacatacactattttggt |
35632421 |
T |
|
| Q |
401 |
ttcataaatctaagcaaaattaatctcttaacttagagtactctctttaataaaaatagctttatagtttaaatgaatgttattga |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35632420 |
ttcataaatctaagcaaaattaatctcttaacttagagtactctctttaataaaaatagctttatagtttaaatgaatgctattga |
35632335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University