View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11128_high_1 (Length: 679)
Name: NF11128_high_1
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11128_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 97 - 372
Target Start/End: Original strand, 23248027 - 23248302
Alignment:
| Q |
97 |
agcgagctaattgccaagttggaggttttgtgattggtcaagaaatgtttggaaagagaaagggaagcagatgagaaaagagagagtagggacagaaaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23248027 |
agcgagctaattgccaagttggaggttttgtgattggtcaagaaatgtttggaaagagaaagggaaacagatgagaaaagagagagtagggacagaaaaa |
23248126 |
T |
|
| Q |
197 |
gtgtgcttgtgtgtagcgacagttacaatgaaagaagaacatttggctcaaaacaagccacgttatcaaaataacatctttgttttcttttttctttaag |
296 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23248127 |
gtgtgcttgtgtgtagcgacagttacaatgaaagaggaacatttggctcaaaacaagccacgttatcaaaataacatctttgttttcttttttctttaag |
23248226 |
T |
|
| Q |
297 |
tatgttagcaaaatatctagactagcaaaatatctagactaactacattactatataaggttcttaaggaatgtac |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23248227 |
catgttagcaaaatatctagactagcaaaatatctagactaactacattactatataaggttcttaaggaatgtac |
23248302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 465 - 666
Target Start/End: Original strand, 23248493 - 23248694
Alignment:
| Q |
465 |
aaatcactagcttcaatacgaactatagtatggacacgttctggaagaacaatcagtgtcgttgatcgatcagaatcgtttgatctggattgtatgacaa |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23248493 |
aaatcactagcttcaatacgaactatagtatggacacgttctggaagaataatcagtatcgttgatcgatcaaaatcgtttgatctggattgtatgacaa |
23248592 |
T |
|
| Q |
565 |
tttgtctacaactacgcaataagacaactgtccaagatagagtttgtaattgtgtcttgtctaggtctaggacttaaaatattttaaggttcgagtgatg |
664 |
Q |
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| T |
23248593 |
tttgtctacaactacacaataagacaactgtccaagatagagtttgtaattgtgtcttatctaggtctaggacttaaaatattttaaggttcgagtgatg |
23248692 |
T |
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| Q |
665 |
tc |
666 |
Q |
| |
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|| |
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| T |
23248693 |
tc |
23248694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 101 - 322
Target Start/End: Original strand, 23252461 - 23252685
Alignment:
| Q |
101 |
agctaattgccaagttggaggttttgtgattggtcaagaaatgtttggaaagagaaagggaagcagatgagaaaagagagagtagggacagaaaaa--gt |
198 |
Q |
| |
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||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||| || |
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| T |
23252461 |
agctagttgccaagttggaggctttgtgattggttaagaaatatttggaaagagaaagggaaacagatgagcaaagagagagtagggacagagaaaaggt |
23252560 |
T |
|
| Q |
199 |
gtgcttgtgtgtagcgacagttacaatgaaagaagaacatttggctcaaaacaagccacgttatcaaaataacatctttgttttcttttttctttaa-gt |
297 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
23252561 |
gtgcttgcgtgtagtgacaattacaatgaaagaggaacatttggctcaaaacaagccacgttatcaaaatagcctctttgttttcttttttctttaaggc |
23252660 |
T |
|
| Q |
298 |
atgttagcaaaatatctagactagc |
322 |
Q |
| |
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|||||||| ||||||||| |||||| |
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| T |
23252661 |
atgttagcgaaatatctatactagc |
23252685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 23258421 - 23258500
Alignment:
| Q |
100 |
gagctaattgccaagttggaggttttgtgattggtcaagaaatgtttggaaagagaaagggaagcagatgagaaaagaga |
179 |
Q |
| |
|
|||||| || |||||||||||| | |||||||||| | || | |||||||| |||||||||| |||||||||||||||| |
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| T |
23258421 |
gagctatttcccaagttggaggctgtgtgattggttatcaattatttggaaaaagaaagggaaacagatgagaaaagaga |
23258500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 23247964 - 23247998
Alignment:
| Q |
34 |
gttgtgtttgaaggaaagaataaggtaacaggcaa |
68 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
23247964 |
gttgtgtttgaaggaaagaataaggtaacaggcaa |
23247998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 23248350 - 23248395
Alignment:
| Q |
421 |
aaaagtactcttag-agtatgctatatattattggccctcgctcaa |
465 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
23248350 |
aaaagtactcttaggagtatgctatatattattggctctcgctcaa |
23248395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 585
Target Start/End: Original strand, 23253155 - 23253212
Alignment:
| Q |
528 |
gatcgatcagaatcgtttgatctggattgtatgacaatttgtctacaactacgcaata |
585 |
Q |
| |
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|||| ||||||| ||||||||||||| | | ||||||||||||||||||||| ||||| |
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| T |
23253155 |
gatcaatcagaaccgtttgatctggagtttgtgacaatttgtctacaactacacaata |
23253212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 23266991 - 23267107
Alignment:
| Q |
153 |
agaaagggaagcagatgagaaaagagagagtagggacagaa--aaagtgtgcttgtgtgtagcgacagttacaatgaaagaagaacatttggctcaaaac |
250 |
Q |
| |
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|||||||||| | | ||||||||||||| |||||||||| |||||||||||||||||| ||| || |||| ||||| ||||| |||||| ||||| |
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| T |
23266991 |
agaaagggaaaccgttgagaaaagagag--tagggacagagggaaagtgtgcttgtgtgtattgactgtgacaacaaaagaggaacacttggctaaaaac |
23267088 |
T |
|
| Q |
251 |
aagccacgttatcaaaata |
269 |
Q |
| |
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| |||||||||| ||||| |
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| T |
23267089 |
gaaccacgttatctaaata |
23267107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 23252376 - 23252410
Alignment:
| Q |
34 |
gttgtgtttgaaggaaagaataaggtaacaggcaa |
68 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
23252376 |
gttgtgtttgaaggaaagaataaggcaacaggcaa |
23252410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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