View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11128_high_2 (Length: 433)
Name: NF11128_high_2
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11128_high_2 |
 |  |
|
| [»] scaffold0002 (2 HSPs) |
 |  |  |
|
| [»] scaffold0351 (2 HSPs) |
 |  |  |
|
| [»] scaffold0027 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0002 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 113252 - 112850
Alignment:
| Q |
12 |
atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
113252 |
atgaataaagaaaccctcaacttctttatcactgaaaaactcatttagattagtaatcaaaccaaaaagacccacttattagcatccaaacaaattttaa |
113153 |
T |
 |
| Q |
112 |
acagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaat |
211 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
113152 |
acagaagattatttttaaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttattaaattatccttgattttaaat |
113053 |
T |
 |
| Q |
212 |
tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtcnnnnnnnncattcag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
113052 |
tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgttgttaagttggtc--taaaaacattcag |
112955 |
T |
 |
| Q |
312 |
gtctaagagggattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctcac |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
112954 |
gtctaagaggaattccacatgtgcaccattaaaacaagaatgtcatatgacattggtcagtccaattatgacacataagacaattcaactattttctcac |
112855 |
T |
 |
| Q |
412 |
tcttt |
416 |
Q |
| |
|
||||| |
|
|
| T |
112854 |
tcttt |
112850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 116860 - 116458
Alignment:
| Q |
12 |
atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
116860 |
atgaataaagaaaccctcaacttctttatcactgaaaaactcatttagattagtaatcaaaccaaaaagacccacttattacaatccaaacaaattttaa |
116761 |
T |
 |
| Q |
112 |
acagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaat |
211 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
116760 |
acagaagattatttttaaaaatttgggaacaagattttggaacgtttaatttgaaaataaaagttgactgcaatttactaaattatccttgattttaaat |
116661 |
T |
 |
| Q |
212 |
tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtcnnnnnnnncattcag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
116660 |
tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc--aaaaaacattcag |
116563 |
T |
 |
| Q |
312 |
gtctaagagggattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctcac |
411 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
116562 |
gtctaagagggattccacaagtgcaccattaaaacaagaatgccatatgacattggtcagcccaattgtggcacataagacaattcaactattttctcac |
116463 |
T |
 |
| Q |
412 |
tcttt |
416 |
Q |
| |
|
||||| |
|
|
| T |
116462 |
tcttt |
116458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 8516 - 8742
Alignment:
| Q |
193 |
attatccttgattttaaattggtttgaatgggg-tatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagt |
291 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8516 |
attatccttgaatttaaattggtttgaatgggggtatgttgattttttatccaaatgaaaatgtgcacagtttctaacttagacctcaatgtttttaagt |
8615 |
T |
 |
| Q |
292 |
tggtcnnnnnnnncattcaggtctaagagg----gattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacat |
387 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
8616 |
tggtc--aaaaaacattcaggtctaagaggtatatattccacatgtgtatcattaaaacaagaatgtcatatgacattggtcagtctaattgtgacacat |
8713 |
T |
 |
| Q |
388 |
aagacaattcaactattttctcactcttt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8714 |
aagacaattcaactattttctcactcttt |
8742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8380 - 8515
Alignment:
| Q |
12 |
atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa |
111 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8380 |
atgaataaagaaaccctcaacttcattatcactgaaaaactcatttacattagtaatcaaaccaaaaagacccacttattaccatccaaacaaattttaa |
8479 |
T |
 |
| Q |
112 |
acagaaggttatttttgaaaatttgggaacaagatt |
147 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8480 |
acagaagattatttttgaaaatttgggaacaagatt |
8515 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 41218566 - 41218693
Alignment:
| Q |
98 |
caaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgc--aatttactaaatt |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| |||| | |||||||| |||| ||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
41218566 |
caaacaaattttaaacataaggttatttttctaaatttaggaaataatttttggaatgttttattgaaaaataaa-gtagagtgcgcaatttactaaatt |
41218664 |
T |
 |
| Q |
196 |
atccttgattttaaattggtttgaatggg |
224 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
41218665 |
atcctttattttaaattggtttgaatggg |
41218693 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 37437874 - 37437911
Alignment:
| Q |
235 |
tttttatccaaatgaaaatgtgcacactttctaactta |
272 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
37437874 |
tttttgtccaaatgaaaatgtgcacattttctaactta |
37437911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 12324132 - 12323991
Alignment:
| Q |
84 |
cacttattaccatccaaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgca |
183 |
Q |
| |
|
||||| |||| || |||||||||||| |||| ||||||||||||| | ||| |||| ||| | |||||| |||| || ||||||||||| || |||| | |
|
|
| T |
12324132 |
cacttgttactattcaaacaaattttcaacaaaaggttatttttgtatattgaggaaaaagttgttggaatgttttatcgaaaaataaaaattaagtgta |
12324033 |
T |
 |
| Q |
184 |
atttactaaattatccttgattttaaattggtttgaatgggg |
225 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
12324032 |
atttactaaattatcctttattttaaattgatttaaatgggg |
12323991 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 26520461 - 26520587
Alignment:
| Q |
98 |
caaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattat |
197 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||| |||| || |||||||| |||| ||| |||||||||| |||| || | |||| |||||||| |
|
|
| T |
26520461 |
caaacaaattttaaacaaaatattatttttctaaatttaggaaatagtttttggaatgttttattaaaaaataaaaattgaatgtagtttattaaattat |
26520560 |
T |
 |
| Q |
198 |
ccttgattttaaattggtttgaatggg |
224 |
Q |
| |
|
| |||||||| |||||||||||||||| |
|
|
| T |
26520561 |
ctttgattttgaattggtttgaatggg |
26520587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 31612183 - 31612311
Alignment:
| Q |
169 |
taaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggtatgttga--ttttttatccaaatgaaaatgtgcacactttct |
266 |
Q |
| |
|
||||| ||||||| |||| |||||||| ||||| ||||||||||||||||||| || ||| |||||| ||||||| |||| || |||| || || |
|
|
| T |
31612183 |
taaaaattgagtgtaattcactaaattgtcctttattttaaattggtttgaatatggacaagtgaatttttttgtccaaataaaaaggtacacatttgct |
31612282 |
T |
 |
| Q |
267 |
aacttagacctcaatgtttttaagttggt |
295 |
Q |
| |
|
||||||||||| |||||||||| |||||| |
|
|
| T |
31612283 |
aacttagaccttaatgtttttaggttggt |
31612311 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 31612106 - 31612172
Alignment:
| Q |
74 |
caaaaagacccacttattaccatccaaacaaattttaaacagaaggttatttttgaaaatttgggaa |
140 |
Q |
| |
|
|||||| |||||||| |||| || |||||||||||||| || |||||| |||||| |||||| |||| |
|
|
| T |
31612106 |
caaaaacacccacttgttactattcaaacaaattttaagcaaaaggttgtttttgtaaatttaggaa |
31612172 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 42035522 - 42035437
Alignment:
| Q |
107 |
tttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaa |
193 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42035522 |
tttaaacagaagattatttttgtaaatttgaaaacaat-ttttggaatgttttattgaaaaataaaagttgagtgcaatttactaaa |
42035437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 3297212 - 3297276
Alignment:
| Q |
162 |
tgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggta |
227 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
3297212 |
tgaaaaataaaaat-gagtgcaatttattaaattatgatttattttaaattggtttaaatggggta |
3297276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 26042637 - 26042576
Alignment:
| Q |
235 |
tttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc |
296 |
Q |
| |
|
||||| ||||||| |||| ||||||| || |||||||||| || |||||||||||||||||| |
|
|
| T |
26042637 |
tttttttccaaataaaaaggtgcacatttactaacttagaacttaatgtttttaagttggtc |
26042576 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 11656943 - 11656873
Alignment:
| Q |
155 |
gtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatgggg |
225 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
11656943 |
gtttcattaaaaaataaaaattgagtgcaatttacaaaattctcctttattttaaattggttttaatgggg |
11656873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 19374240 - 19374186
Alignment:
| Q |
362 |
cattggtcagtccaattgtgacacataagacaattcaactattttctcactcttt |
416 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
19374240 |
cattggccagttcaattgtgacacataagccaattcaactattttctctctcttt |
19374186 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 37155037 - 37155111
Alignment:
| Q |
146 |
ttttggaacgtttaattgaaaaataaaag-ttgagtgcaatttactaaattatccttgattttaaattggtttga |
219 |
Q |
| |
|
|||||||| |||| |||||||| ||||| ||||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
37155037 |
ttttggaatgttttattgaaaattaaaaaattgagtgcaatttactaaagtgtcctttattttaaattggtttga |
37155111 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 9270319 - 9270395
Alignment:
| Q |
146 |
ttttggaacgtttaattgaaaaataaaagt-tgagtgcaatttactaaattatccttgattttaaattggtttgaat |
221 |
Q |
| |
|
|||| ||| |||| |||||||||||||| | ||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9270319 |
tttttgaatgttttattgaaaaataaaaaaattagtacaatttactaaattatcctttgttttaaattggtttgaat |
9270395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 33206022 - 33205976
Alignment:
| Q |
360 |
gacattggtcagtccaattgtgacacataagacaattcaactatttt |
406 |
Q |
| |
|
||||||| ||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
33206022 |
gacattgatcaatctaattgtgacacgtaagacaattcaactatttt |
33205976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 25155994 - 25155899
Alignment:
| Q |
203 |
attttaaattggtttgaatggggt-atgttgatt-ttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc |
296 |
Q |
| |
|
||||||||| |||||| |||||| | ||||||| |||| ||||||| ||||||| |||||||| |||||||||||| ||| |||||| ||||||| |
|
|
| T |
25155994 |
attttaaataggtttgtatgggggcaagttgattcttttgtccaaatcaaaatgtacacactttataacttagaccttaatatttttaggttggtc |
25155899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 45475707 - 45475798
Alignment:
| Q |
100 |
aacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaa |
192 |
Q |
| |
|
||||||||| ||||| ||| ||||||||| |||||| | || |||||||| || ||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
45475707 |
aacaaatttgaaacaaaagattatttttgtaaatttagaaaacagattttgaaatatttgattgaaaaataaaaaat-agtgcaatttactaa |
45475798 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 39976 - 40029
Alignment:
| Q |
235 |
tttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgttttta |
288 |
Q |
| |
|
||||| || |||| ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
39976 |
tttttgtcaaaatcaaaatgtgcacacttgctaacttagaccttaatgttttta |
40029 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 16509661 - 16509515
Alignment:
| Q |
148 |
ttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggtatgttg-attttttatccaaa |
246 |
Q |
| |
|
|||||| |||| |||||||||||||| || |||| |||| |||||||||| ||| |||||||||||| |||||||||| | || | |||||| || || |
|
|
| T |
16509661 |
ttggaatgttttattgaaaaataaaattt-agtgtaatt-actaaattattctttattttaaattgg-ttgaatggggcaagtagttttttttgtctgaa |
16509565 |
T |
 |
| Q |
247 |
tgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc |
296 |
Q |
| |
|
|||||| ||| |||||| |||||||||| || || ||||||||||||| |
|
|
| T |
16509564 |
tgaaaaagtgaacacttgctaacttagatcttaaatattttaagttggtc |
16509515 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 39900995 - 39900935
Alignment:
| Q |
349 |
gaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctc |
409 |
Q |
| |
|
||||| || ||||| |||| || |||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
39900995 |
gaatgtcacatgactttggccaatccatttgtgacacataagccaattcaactattctctc |
39900935 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 32537675 - 32537636
Alignment:
| Q |
160 |
attgaaaaataaaagttgagtgcaatttactaaattatcc |
199 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32537675 |
attggaaaataaaaattgagtgcaatttactaaattatcc |
32537636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 21849177 - 21849243
Alignment:
| Q |
121 |
tatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaattt |
187 |
Q |
| |
|
|||||||| |||||| |||| || ||||| || |||| |||||||||||||| ||||||||||||| |
|
|
| T |
21849177 |
tatttttgtaaatttaggaaacagtttttgaaatgttttattgaaaaataaaaattgagtgcaattt |
21849243 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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