View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11128_high_2 (Length: 433)

Name: NF11128_high_2
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11128_high_2
NF11128_high_2
[»] scaffold0002 (2 HSPs)
scaffold0002 (12-416)||(112850-113252)
scaffold0002 (12-416)||(116458-116860)
[»] scaffold0351 (2 HSPs)
scaffold0351 (193-416)||(8516-8742)
scaffold0351 (12-147)||(8380-8515)
[»] chr8 (2 HSPs)
chr8 (98-224)||(41218566-41218693)
chr8 (235-272)||(37437874-37437911)
[»] chr6 (1 HSPs)
chr6 (84-225)||(12323991-12324132)
[»] chr3 (3 HSPs)
chr3 (98-224)||(26520461-26520587)
chr3 (169-295)||(31612183-31612311)
chr3 (74-140)||(31612106-31612172)
[»] chr1 (3 HSPs)
chr1 (107-193)||(42035437-42035522)
chr1 (162-227)||(3297212-3297276)
chr1 (235-296)||(26042576-26042637)
[»] chr2 (5 HSPs)
chr2 (155-225)||(11656873-11656943)
chr2 (362-416)||(19374186-19374240)
chr2 (146-219)||(37155037-37155111)
chr2 (146-221)||(9270319-9270395)
chr2 (360-406)||(33205976-33206022)
[»] chr4 (2 HSPs)
chr4 (203-296)||(25155899-25155994)
chr4 (100-192)||(45475707-45475798)
[»] scaffold0027 (1 HSPs)
scaffold0027 (235-288)||(39976-40029)
[»] chr5 (2 HSPs)
chr5 (148-296)||(16509515-16509661)
chr5 (349-409)||(39900935-39900995)
[»] chr7 (2 HSPs)
chr7 (160-199)||(32537636-32537675)
chr7 (121-187)||(21849177-21849243)


Alignment Details
Target: scaffold0002 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 113252 - 112850
Alignment:
12 atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
113252 atgaataaagaaaccctcaacttctttatcactgaaaaactcatttagattagtaatcaaaccaaaaagacccacttattagcatccaaacaaattttaa 113153  T
112 acagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaat 211  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
113152 acagaagattatttttaaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttattaaattatccttgattttaaat 113053  T
212 tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtcnnnnnnnncattcag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||    
113052 tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgttgttaagttggtc--taaaaacattcag 112955  T
312 gtctaagagggattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctcac 411  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
112954 gtctaagaggaattccacatgtgcaccattaaaacaagaatgtcatatgacattggtcagtccaattatgacacataagacaattcaactattttctcac 112855  T
412 tcttt 416  Q
    |||||    
112854 tcttt 112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 116860 - 116458
Alignment:
12 atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
116860 atgaataaagaaaccctcaacttctttatcactgaaaaactcatttagattagtaatcaaaccaaaaagacccacttattacaatccaaacaaattttaa 116761  T
112 acagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaat 211  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||    
116760 acagaagattatttttaaaaatttgggaacaagattttggaacgtttaatttgaaaataaaagttgactgcaatttactaaattatccttgattttaaat 116661  T
212 tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtcnnnnnnnncattcag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
116660 tggtttgaatggggtatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc--aaaaaacattcag 116563  T
312 gtctaagagggattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctcac 411  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
116562 gtctaagagggattccacaagtgcaccattaaaacaagaatgccatatgacattggtcagcccaattgtggcacataagacaattcaactattttctcac 116463  T
412 tcttt 416  Q
    |||||    
116462 tcttt 116458  T

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Target: scaffold0351 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 193 - 416
Target Start/End: Original strand, 8516 - 8742
Alignment:
193 attatccttgattttaaattggtttgaatgggg-tatgttgattttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagt 291  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
8516 attatccttgaatttaaattggtttgaatgggggtatgttgattttttatccaaatgaaaatgtgcacagtttctaacttagacctcaatgtttttaagt 8615  T
292 tggtcnnnnnnnncattcaggtctaagagg----gattccacatgtgcaccattaaaacaagaatgccatatgacattggtcagtccaattgtgacacat 387  Q
    |||||        |||||||||||||||||     |||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||    
8616 tggtc--aaaaaacattcaggtctaagaggtatatattccacatgtgtatcattaaaacaagaatgtcatatgacattggtcagtctaattgtgacacat 8713  T
388 aagacaattcaactattttctcactcttt 416  Q
    |||||||||||||||||||||||||||||    
8714 aagacaattcaactattttctcactcttt 8742  T

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Target: scaffold0351; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8380 - 8515
Alignment:
12 atgaataaagaaacccttaacttctttatcactgaaaaactcaattagattagtaaccaaaccaaaaagacccacttattaccatccaaacaaattttaa 111  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
8380 atgaataaagaaaccctcaacttcattatcactgaaaaactcatttacattagtaatcaaaccaaaaagacccacttattaccatccaaacaaattttaa 8479  T
112 acagaaggttatttttgaaaatttgggaacaagatt 147  Q
    ||||||| ||||||||||||||||||||||||||||    
8480 acagaagattatttttgaaaatttgggaacaagatt 8515  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 41218566 - 41218693
Alignment:
98 caaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgc--aatttactaaatt 195  Q
    ||||||||||||||||| ||||||||||||  |||||| ||||  |  |||||||| |||| ||||||||||||| || ||||||  |||||||||||||    
41218566 caaacaaattttaaacataaggttatttttctaaatttaggaaataatttttggaatgttttattgaaaaataaa-gtagagtgcgcaatttactaaatt 41218664  T
196 atccttgattttaaattggtttgaatggg 224  Q
    |||||| ||||||||||||||||||||||    
41218665 atcctttattttaaattggtttgaatggg 41218693  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 37437874 - 37437911
Alignment:
235 tttttatccaaatgaaaatgtgcacactttctaactta 272  Q
    ||||| |||||||||||||||||||| |||||||||||    
37437874 tttttgtccaaatgaaaatgtgcacattttctaactta 37437911  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 12324132 - 12323991
Alignment:
84 cacttattaccatccaaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgca 183  Q
    ||||| |||| || |||||||||||| |||| ||||||||||||| | |||  |||| ||| | |||||| |||| || ||||||||||| || |||| |    
12324132 cacttgttactattcaaacaaattttcaacaaaaggttatttttgtatattgaggaaaaagttgttggaatgttttatcgaaaaataaaaattaagtgta 12324033  T
184 atttactaaattatccttgattttaaattggtttgaatgggg 225  Q
    |||||||||||||||||| ||||||||||| ||| |||||||    
12324032 atttactaaattatcctttattttaaattgatttaaatgggg 12323991  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 26520461 - 26520587
Alignment:
98 caaacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattat 197  Q
    ||||||||||||||||| ||  ||||||||  |||||| ||||  || |||||||| |||| ||| |||||||||| |||| || | |||| ||||||||    
26520461 caaacaaattttaaacaaaatattatttttctaaatttaggaaatagtttttggaatgttttattaaaaaataaaaattgaatgtagtttattaaattat 26520560  T
198 ccttgattttaaattggtttgaatggg 224  Q
    | |||||||| ||||||||||||||||    
26520561 ctttgattttgaattggtttgaatggg 26520587  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 31612183 - 31612311
Alignment:
169 taaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggtatgttga--ttttttatccaaatgaaaatgtgcacactttct 266  Q
    ||||| ||||||| |||| |||||||| ||||| |||||||||||||||||||  ||     |||  |||||| ||||||| |||| || |||| || ||    
31612183 taaaaattgagtgtaattcactaaattgtcctttattttaaattggtttgaatatggacaagtgaatttttttgtccaaataaaaaggtacacatttgct 31612282  T
267 aacttagacctcaatgtttttaagttggt 295  Q
    ||||||||||| |||||||||| ||||||    
31612283 aacttagaccttaatgtttttaggttggt 31612311  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 31612106 - 31612172
Alignment:
74 caaaaagacccacttattaccatccaaacaaattttaaacagaaggttatttttgaaaatttgggaa 140  Q
    |||||| |||||||| |||| || |||||||||||||| || |||||| |||||| |||||| ||||    
31612106 caaaaacacccacttgttactattcaaacaaattttaagcaaaaggttgtttttgtaaatttaggaa 31612172  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 42035522 - 42035437
Alignment:
107 tttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaa 193  Q
    |||||||||||| ||||||||| |||||||  |||||  |||||||| |||| ||||||||||||||||||||||||||||||||||    
42035522 tttaaacagaagattatttttgtaaatttgaaaacaat-ttttggaatgttttattgaaaaataaaagttgagtgcaatttactaaa 42035437  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 3297212 - 3297276
Alignment:
162 tgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggta 227  Q
    |||||||||||| | |||||||||||| ||||||||  || ||||||||||||||| |||||||||    
3297212 tgaaaaataaaaat-gagtgcaatttattaaattatgatttattttaaattggtttaaatggggta 3297276  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 26042637 - 26042576
Alignment:
235 tttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc 296  Q
    ||||| ||||||| |||| ||||||| || |||||||||| || ||||||||||||||||||    
26042637 tttttttccaaataaaaaggtgcacatttactaacttagaacttaatgtttttaagttggtc 26042576  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 11656943 - 11656873
Alignment:
155 gtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatgggg 225  Q
    |||| ||| |||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||| |||||||    
11656943 gtttcattaaaaaataaaaattgagtgcaatttacaaaattctcctttattttaaattggttttaatgggg 11656873  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 19374240 - 19374186
Alignment:
362 cattggtcagtccaattgtgacacataagacaattcaactattttctcactcttt 416  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||    
19374240 cattggccagttcaattgtgacacataagccaattcaactattttctctctcttt 19374186  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 37155037 - 37155111
Alignment:
146 ttttggaacgtttaattgaaaaataaaag-ttgagtgcaatttactaaattatccttgattttaaattggtttga 219  Q
    |||||||| |||| |||||||| |||||  ||||||||||||||||||| | ||||| |||||||||||||||||    
37155037 ttttggaatgttttattgaaaattaaaaaattgagtgcaatttactaaagtgtcctttattttaaattggtttga 37155111  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 9270319 - 9270395
Alignment:
146 ttttggaacgtttaattgaaaaataaaagt-tgagtgcaatttactaaattatccttgattttaaattggtttgaat 221  Q
    |||| ||| |||| ||||||||||||||   | ||| ||||||||||||||||||||  ||||||||||||||||||    
9270319 tttttgaatgttttattgaaaaataaaaaaattagtacaatttactaaattatcctttgttttaaattggtttgaat 9270395  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 406
Target Start/End: Complemental strand, 33206022 - 33205976
Alignment:
360 gacattggtcagtccaattgtgacacataagacaattcaactatttt 406  Q
    ||||||| ||| || ||||||||||| ||||||||||||||||||||    
33206022 gacattgatcaatctaattgtgacacgtaagacaattcaactatttt 33205976  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 25155994 - 25155899
Alignment:
203 attttaaattggtttgaatggggt-atgttgatt-ttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc 296  Q
    ||||||||| |||||| ||||||  | ||||||| |||| ||||||| ||||||| |||||||| |||||||||||| ||| |||||| |||||||    
25155994 attttaaataggtttgtatgggggcaagttgattcttttgtccaaatcaaaatgtacacactttataacttagaccttaatatttttaggttggtc 25155899  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 45475707 - 45475798
Alignment:
100 aacaaattttaaacagaaggttatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaatttactaa 192  Q
    ||||||||| ||||| ||| ||||||||| |||||| | ||  |||||||| ||  ||| ||||||||||||||  | |||||||||||||||    
45475707 aacaaatttgaaacaaaagattatttttgtaaatttagaaaacagattttgaaatatttgattgaaaaataaaaaat-agtgcaatttactaa 45475798  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 39976 - 40029
Alignment:
235 tttttatccaaatgaaaatgtgcacactttctaacttagacctcaatgttttta 288  Q
    ||||| || |||| ||||||||||||||| ||||||||||||| ||||||||||    
39976 tttttgtcaaaatcaaaatgtgcacacttgctaacttagaccttaatgttttta 40029  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 16509661 - 16509515
Alignment:
148 ttggaacgtttaattgaaaaataaaagttgagtgcaatttactaaattatccttgattttaaattggtttgaatggggtatgttg-attttttatccaaa 246  Q
    |||||| |||| |||||||||||||| || |||| |||| |||||||||| ||| |||||||||||| |||||||||| | || |  |||||| ||  ||    
16509661 ttggaatgttttattgaaaaataaaattt-agtgtaatt-actaaattattctttattttaaattgg-ttgaatggggcaagtagttttttttgtctgaa 16509565  T
247 tgaaaatgtgcacactttctaacttagacctcaatgtttttaagttggtc 296  Q
    |||||| ||| |||||| |||||||||| || ||   |||||||||||||    
16509564 tgaaaaagtgaacacttgctaacttagatcttaaatattttaagttggtc 16509515  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 39900995 - 39900935
Alignment:
349 gaatgccatatgacattggtcagtccaattgtgacacataagacaattcaactattttctc 409  Q
    ||||| || ||||| |||| || |||| |||||||||||||| ||||||||||||| ||||    
39900995 gaatgtcacatgactttggccaatccatttgtgacacataagccaattcaactattctctc 39900935  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 32537675 - 32537636
Alignment:
160 attgaaaaataaaagttgagtgcaatttactaaattatcc 199  Q
    |||| ||||||||| |||||||||||||||||||||||||    
32537675 attggaaaataaaaattgagtgcaatttactaaattatcc 32537636  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 21849177 - 21849243
Alignment:
121 tatttttgaaaatttgggaacaagattttggaacgtttaattgaaaaataaaagttgagtgcaattt 187  Q
    |||||||| |||||| ||||  || ||||| || |||| |||||||||||||| |||||||||||||    
21849177 tatttttgtaaatttaggaaacagtttttgaaatgttttattgaaaaataaaaattgagtgcaattt 21849243  T

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