View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11128_high_4 (Length: 349)
Name: NF11128_high_4
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11128_high_4 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 25802004 - 25802352
Alignment:
| Q |
1 |
cacacaaacaaacagagaagaaacagaacaatgaaatgcagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802004 |
cacacaaacaaaaagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttc |
25802103 |
T |
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| Q |
101 |
cattcaaatgcgacggctgcaaagaaataggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802104 |
cattcaaatgcgacggctgcaaagaaataggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccac |
25802203 |
T |
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| Q |
201 |
cacactcttccatccattttacacaaaatgcacctttcagttcatgcaaattccaccaggaaacacgccgcgttattgcaacgcatgcgaaaaggacgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25802204 |
cacactcttccatccattttacacaaaatgcacctttcagttcatgcaaattccaccaggaaacacgctgcgttattgcaacgcatgcgaaaaggacgtg |
25802303 |
T |
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| Q |
301 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccat |
349 |
Q |
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| T |
25802304 |
aacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccat |
25802352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 25816102 - 25816332
Alignment:
| Q |
6 |
aaacaaacagagaagaaacagaacaatgaaatgcagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattc |
105 |
Q |
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| T |
25816102 |
aaacaaatagagaagaaacagaacaatgaaatacaacgagatatcacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattc |
25816201 |
T |
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| Q |
106 |
aaatgcgacggctgcaaagaaataggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacac |
205 |
Q |
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| T |
25816202 |
aaatgcgacggttgcaacgaagtaggcataggttcacgttacaaatgcagcatttgtgacaatgaccttcacacacactgcacaataccttctaccacac |
25816301 |
T |
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| Q |
206 |
tcttccatccattttacacaaaatgcacctt |
236 |
Q |
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| T |
25816302 |
tcttccatgcgttctacacaaaatgcacctt |
25816332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 25816366 - 25816420
Alignment:
| Q |
295 |
gacgtgaacgggtttgtttaccactgcaaatcctgtgggttcgacctccacccat |
349 |
Q |
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| T |
25816366 |
gacgtgaacgggtttgtataccactgcaaatcatgtggatttgacctccacccat |
25816420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 112507 - 112181
Alignment:
| Q |
21 |
aaacagaacaatgaaatgcagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgc |
120 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
112507 |
aaacagaacaatgaaatacagtgagatatcacatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgatggctgc |
112408 |
T |
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| Q |
121 |
aaagaaataggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccatttt |
220 |
Q |
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| T |
112407 |
aaagaaataggcatcgattcacgttaaaaatgcagcatctgcgactacgaccttcatacacactgcgcaataccttccaccacactcttcgatccatttt |
112308 |
T |
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| Q |
221 |
acacaaaatgcacctttcagttcatgcaaattccaccaggaaacacgccgcgttattgcaacgcatgcgaaaaggacgtgaacgggtttgtttaccactg |
320 |
Q |
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| T |
112307 |
acacaaaatgcaccttccaattcatgcaaatcccaccaggaaacacgccgcattactgcaacgcatgcgaaaaggatgtgaacgggtttgtttaccactg |
112208 |
T |
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| Q |
321 |
caaatcctgtgggttcgacctccaccc |
347 |
Q |
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| T |
112207 |
caaatcctgtgggttcgacctccaccc |
112181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 12530527 - 12530663
Alignment:
| Q |
42 |
tgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaataggcataggttca |
141 |
Q |
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||||||||| ||||| ||||| | |||||| ||||||| ||| | ||| ||| |||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
12530527 |
tgagatatctcattttagccatcaaaaacataaactaacatttcaacactccgagtttccattcaaatgtgatggctgcaaagaaattggcataggttcg |
12530626 |
T |
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| Q |
142 |
cgttacaaatgcagcatctgcgactacgaccttcaca |
178 |
Q |
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| T |
12530627 |
cgttacagctgcaacatttgtgactatgatcttcaca |
12530663 |
T |
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