View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11128_high_5 (Length: 343)

Name: NF11128_high_5
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11128_high_5
NF11128_high_5
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-281)||(288915-289195)
[»] chr7 (6 HSPs)
chr7 (1-325)||(16156934-16157259)
chr7 (1-325)||(21368487-21368810)
chr7 (26-279)||(22707560-22707801)
chr7 (159-203)||(9595434-9595478)
chr7 (159-203)||(9646397-9646441)
chr7 (159-200)||(32706452-32706493)
[»] chr4 (8 HSPs)
chr4 (1-325)||(11475551-11475875)
chr4 (5-281)||(34455690-34455968)
chr4 (138-223)||(17266675-17266760)
chr4 (138-203)||(15019260-15019324)
chr4 (138-203)||(39488127-39488191)
chr4 (159-203)||(9167295-9167339)
chr4 (159-203)||(15017640-15017684)
chr4 (159-200)||(34098832-34098873)
[»] scaffold0671 (1 HSPs)
scaffold0671 (1-325)||(2033-2357)
[»] chr8 (6 HSPs)
chr8 (1-281)||(16417398-16417678)
chr8 (1-281)||(18774146-18774427)
chr8 (2-170)||(17459700-17459868)
chr8 (166-281)||(17462373-17462489)
chr8 (159-280)||(18446160-18446280)
chr8 (159-203)||(20730984-20731028)
[»] chr1 (5 HSPs)
chr1 (1-325)||(37260315-37260640)
chr1 (138-203)||(6473884-6473948)
chr1 (138-203)||(22062122-22062186)
chr1 (161-204)||(20190431-20190474)
chr1 (138-203)||(20127181-20127245)
[»] scaffold0359 (1 HSPs)
scaffold0359 (1-304)||(8609-8913)
[»] chr6 (9 HSPs)
chr6 (1-281)||(21299238-21299520)
chr6 (141-273)||(12639454-12639586)
chr6 (33-124)||(9344211-9344302)
chr6 (138-203)||(18781863-18781927)
chr6 (138-203)||(20419616-20419680)
chr6 (159-203)||(18553447-18553491)
chr6 (159-203)||(20417550-20417594)
chr6 (159-203)||(30518282-30518326)
chr6 (159-203)||(20414903-20414947)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-281)||(33622-33902)
[»] chr5 (6 HSPs)
chr5 (1-325)||(22821139-22821464)
chr5 (159-280)||(11126413-11126533)
chr5 (138-203)||(244418-244482)
chr5 (159-223)||(29951844-29951909)
chr5 (159-203)||(29950227-29950271)
chr5 (159-203)||(4568361-4568405)
[»] chr3 (6 HSPs)
chr3 (1-279)||(33757812-33758090)
chr3 (1-281)||(13179729-13180013)
chr3 (1-281)||(13184387-13184671)
chr3 (159-280)||(16019451-16019571)
chr3 (138-201)||(5553584-5553646)
chr3 (162-203)||(22271244-22271285)
[»] chr2 (5 HSPs)
chr2 (1-275)||(44794703-44794979)
chr2 (1-142)||(21465111-21465252)
chr2 (1-118)||(44794596-44794716)
chr2 (138-203)||(6050200-6050264)
chr2 (138-203)||(15409909-15409973)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-173)||(127083-127259)
[»] scaffold0076 (1 HSPs)
scaffold0076 (138-203)||(54881-54945)
[»] scaffold0585 (1 HSPs)
scaffold0585 (138-203)||(850-914)
[»] scaffold0146 (1 HSPs)
scaffold0146 (138-203)||(6725-6789)
[»] scaffold0096 (1 HSPs)
scaffold0096 (138-203)||(22592-22656)
[»] scaffold0083 (1 HSPs)
scaffold0083 (159-203)||(33327-33371)
[»] scaffold0010 (1 HSPs)
scaffold0010 (159-203)||(136867-136911)
[»] scaffold0075 (1 HSPs)
scaffold0075 (138-203)||(25738-25802)
[»] scaffold0017 (1 HSPs)
scaffold0017 (159-203)||(4591-4635)


Alignment Details
Target: scaffold0003 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 289195 - 288915
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  289195 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 289096  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  289095 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 288996  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  288995 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 288915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 16157259 - 16156934
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16157259 actaaaaatattgttaatgaaagggtgtgccaaaaagaaatgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 16157160  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16157159 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 16157060  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac-nnnnnnnaacaaaaatta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  16157059 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacttttttttaacaaaaatta 16156960  T
Q  300 acttgttttttattaaatttccgtgt 325  Q
    |||||| ||||||| ||||| |||||    
T  16156959 acttgtcttttattcaattttcgtgt 16156934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 21368487 - 21368810
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  21368487 actaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaattagaatttagt 21368586  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21368587 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggatgccacactttctaatcctagaaaatgataagtctat 21368686  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacnnnnnnnaacaaaaattaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  21368687 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac-ttttttaacaaaaattaa 21368785  T
Q  301 cttgttttttattaaatttccgtgt 325  Q
    |||  |||||||| ||||| |||||    
T  21368786 cttcctttttattcaattttcgtgt 21368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 26 - 279
Target Start/End: Original strand, 22707560 - 22707801
Alignment:
Q  26 tgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggttttgaattggtgtttaggctgattt 125  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |    |||||||||||||||||||||||||||||||| ||||||    
T  22707560 tgtgccaaaaggaaaagaaaattatgtattgggattaattttgataatgatttgaat----aatgagaatttggttttgaattggtgtttaggttgattt 22707655  T
Q  126 gtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgg-aatgaagatcaccacaagaaag 224  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||||||    
T  22707656 gtggtttcaaacaagaaatgcaatagaaagtttagggacgcctcactttctaatcctagaaactgataagcctatggaaataaagatcaccacaagaaag 22707755  T
Q  225 gattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactc 279  Q
    ||||||||         |||||||||||||| || ||||||||||||||||||||    
T  22707756 gattcttg---------atacaaggtccaattcataacctaaagagcaattactc 22707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 9595434 - 9595478
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  9595434 agggacgccacactttctaatccaagaaagtgataagtctatgga 9595478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 9646397 - 9646441
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  9646397 agggacgccacactttctaatccaagaaagtgataagtctatgga 9646441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 32706493 - 32706452
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    |||||| |||||||||||||||| ||||| ||||||||||||    
T  32706493 agggacaccacactttctaatccaagaaagtgataagtctat 32706452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 11475875 - 11475551
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11475875 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 11475776  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  11475775 tttgaattggtgtttaggctgatttgtggtttcagacaagaaatggaatggagagtttagagacgccacactttctaatcctagaaaatgataagtccat 11475676  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacnnnnnnnaacaaaaattaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  11475675 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcactttttttaacaaaaattaa 11475576  T
Q  301 cttgttttttattaaatttccgtgt 325  Q
    ||||| ||||||| ||||| |||||    
T  11475575 cttgtcttttattcaattttcgtgt 11475551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 34455968 - 34455690
Alignment:
Q  5 aaaatattgttaatgaaagggtgtgccaaaaagaa-acgaaaattatgtattgggattaatttt-gacaatgatttgagttgaaaatgagaatttggttt 102  Q
    |||||||||| ||||||| | ||||| |||| ||| | ||||||||| |||||||||||||||| ||||||  ||||||||||||| || ||||||| ||    
T  34455968 aaaatattgtgaatgaaatgatgtgc-aaaaggaacatgaaaattatatattgggattaatttttgacaattgtttgagttgaaaacgataatttggatt 34455870  T
Q  103 tgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat-g 201  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | | |    
T  34455869 tgaataggtgtttaggctgatttgtggattcaaacaagaaatggaatggagggtttagggacgccacactttctaatcgtagaaaatgataagtttgtgg 34455770  T
Q  202 gaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34455769 gaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcagttactcac 34455690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 17266675 - 17266760
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga-atgaagatcaccacaagaaa 223  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||   || |||||||||||||||    
T  17266675 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcaccacaagaaa 17266760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 15019260 - 15019324
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  15019260 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 15019324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 39488127 - 39488191
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  39488127 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 39488191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 9167339 - 9167295
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  9167339 agggacgccacactttctaatccaagaaagtgataagtctatgga 9167295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 15017640 - 15017684
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  15017640 agggacgccacactttctaatccaagaaagtgataagtctatgga 15017684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 34098873 - 34098832
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||| | ||| ||||||||||||    
T  34098873 agggacgccacactttctaatccaataaagtgataagtctat 34098832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 2357 - 2033
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357 actaaaaatattgttaatgaaaaggtgtgccaaaaagaaacgaaaatcatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 2258  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2257 tttgaattggtgtttaggctgatttgtggtttcaaacaagaattggaatgcagagtttagggacgccacactttctaatcctagaaaatgataagtctat 2158  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacnnnnnnnaacaaaaattaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  2157 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcactttttttaacaaaaattaa 2058  T
Q  301 cttgttttttattaaatttccgtgt 325  Q
    ||||| ||||||| ||||| |||||    
T  2057 cttgtcttttattcaattttcgtgt 2033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 16417398 - 16417678
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16417398 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgagattaattttgacaatgatttgagttgaaaatgagaatttggt 16417497  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16417498 tttgaattggtgtttaggctgatttgtggtttcaatcaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 16417597  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16417598 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 16417678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 18774146 - 18774427
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaa-tgagaatttgg 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18774146 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaaatgagaatttgg 18774245  T
Q  100 ttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtcta 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18774246 ttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtcta 18774345  T
Q  200 tggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18774346 tggaatgaagatcaccacaagaaaggattcttgatatgatcaatactaggtccaatccagaacctaaagagcaattactcac 18774427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 17459700 - 17459868
Alignment:
Q  2 ctaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggtt 101  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17459700 ctaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggtt 17459799  T
Q  102 ttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17459800 ttgaattggtgtttaggctgatttgtggtttcaaacaagaaatagaatggagagtttagggacgccaca 17459868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 17462373 - 17462489
Alignment:
Q  166 ccacactttctaatcctagaaaatgataagtctatggaatgaagatcaccacaagaaa-ggattcttgatatgatcaatacaaggtccaatccagaacct 264  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  17462373 ccacactttctaatcctagaaaattataagtctatggaatgaagatcaccacaagaaaaggattcttgatatgatcaatacaaggtccaatcaagaacct 17462472  T
Q  265 aaagagcaattactcac 281  Q
    |||||||||||||||||    
T  17462473 aaagagcaattactcac 17462489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 18446280 - 18446160
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctat-ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatcc 257  Q
    ||||||||||||||||||||||| ||||| |||||||||||| ||| ||| || |||||||||||| |||||||||||| ||||| |   ||||||||||    
T  18446280 agggacgccacactttctaatccaagaaagtgataagtctatgggattgaggaccaccacaagaaaagattcttgatataatcaa-aattggtccaatcc 18446182  T
Q  258 agaacctaaagagcaattactca 280  Q
    |||||| ||||||||||| ||||    
T  18446181 agaacc-aaagagcaattgctca 18446160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 20731028 - 20730984
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  20731028 agggacgccacactttctaatccaagaaagtgataagtctatgga 20730984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 37260640 - 37260315
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37260640 actaaaaatattgtcaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttgat 37260541  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37260540 tttgaattggtgtttaggctgattcgtggtttcaaacaagaattggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 37260441  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac-nnnnnnnaacaaaaatta 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  37260440 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacttttttttaacaaaaatta 37260341  T
Q  300 acttgttttttattaaatttccgtgt 325  Q
    |||||| ||||||| ||||| |||||    
T  37260340 acttgtcttttattcaattttcgtgt 37260315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 6473948 - 6473884
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  6473948 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 6473884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 22062122 - 22062186
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  22062122 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 22062186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 20190431 - 20190474
Alignment:
Q  161 ggacgccacactttctaatcctagaaaatgataagtctatggaa 204  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  20190431 ggacgccacactttctaatccaagaaactgataagtctatggaa 20190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 20127245 - 20127181
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| |||||  ||||||||||||||    
T  20127245 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagcgataagtctatgga 20127181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 8609 - 8913
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaa-tgagaatttgg 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8609 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaaatgagaatttgg 8708  T
Q  100 ttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtcta 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8709 ttttgaattggtgtttaggctgatatgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtcta 8808  T
Q  200 tggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacnnnnnnnaacaaaaatta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  8809 tggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcactttttttaacaaaaatta 8908  T
Q  300 acttg 304  Q
    |||||    
T  8909 acttg 8913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 21299238 - 21299520
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaa--tgagaatttg 98  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  21299238 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaaaatgagaatttg 21299337  T
Q  99 gttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299338 gttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 21299437  T
Q  199 atggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21299438 atggaatgaagatcaccacaagaaaggattcttgatatgatcaatactaggtccaatccagaacctaaagagcaattactcac 21299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 12639586 - 12639454
Alignment:
Q  141 aaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatggaatgaagatcaccacaagaaaggattcttgatatgatc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12639586 aaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatagaatgaagatcaccacaagaaaggattcttgatatgatc 12639487  T
Q  241 aatacaaggtccaatccagaacctaaagagcaa 273  Q
    |||||||||||||||||||||||||||||||||    
T  12639486 aatacaaggtccaatccagaacctaaagagcaa 12639454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 9344302 - 9344211
Alignment:
Q  33 aaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggttttgaattggtgtttaggctgatt 124  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9344302 aaaagaaacgaaaattatgtattaggattgattttgacgatgatttgagttgaaaacgagaatttggttttgaattggtgttttggctgatt 9344211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 18781927 - 18781863
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  18781927 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 18781863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 20419616 - 20419680
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  20419616 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 20419680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 18553491 - 18553447
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  18553491 agggacgccacactttctaatccaagaaagtgataagtctatgga 18553447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 20417550 - 20417594
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  20417550 agggacgccacactttctaatccaagaaagtgataagtctatgga 20417594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 30518282 - 30518326
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  30518282 agggacgccacactttctaatccaagaaagtgataagtctatgga 30518326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 20414903 - 20414947
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||    
T  20414903 agggacgccacactttctaatctaagaaagtgataagtctatgga 20414947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 33622 - 33902
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  33622 actaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgcattgggattatttttgacaatgatttgagttgaaaatgagaatttggt 33721  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33722 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatgaagagtttagggacgccacactttctaatcctagaaaatgataagtctat 33821  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33822 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaatgtccaatccagaacctaaagagcaattactcac 33902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 22821139 - 22821464
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  22821139 actaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttggcaatgaattgagttgaaaatgagaatttggt 22821238  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  22821239 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttaggaacgccacactttctaatcttagaaaatgataagtctat 22821338  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcacnnnnnnnaacaaaaattaa 300  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  22821339 ggaatgaagttcaccccaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac-ttttttaacaaaaattaa 22821437  T
Q  301 cttg--ttttttattaaatttccgtgt 325  Q
    ||||   |||||||| |||||||||||    
T  22821438 cttgccctttttattcaatttccgtgt 22821464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 11126413 - 11126533
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatggaat-gaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatcc 257  Q
    ||||| ||||||||||||||||| ||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||| |   |||||||||     
T  11126413 agggatgccacactttctaatccaagaaagtggtaagtctatgggattgaggatcaccacaagaaaggattcttgatatgatcaa-aattggtccaatca 11126511  T
Q  258 agaacctaaagagcaattactca 280  Q
    |||||| ||||||||||| ||||    
T  11126512 agaacc-aaagagcaattgctca 11126533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 244418 - 244482
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  244418 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 244482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 29951909 - 29951844
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga-atgaagatcaccacaagaaa 223  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||   || |||||||||||||||    
T  29951909 agggacgccacactttctaatccaagaaagtgataagtctatggatgcgaggatcaccacaagaaa 29951844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 29950271 - 29950227
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  29950271 agggacgccacactttctaatccaagaaagtgataagtctatgga 29950227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 4568405 - 4568361
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||    
T  4568405 agggacgccacactttctaatccaaaaaagtgataagtctatgga 4568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 33757812 - 33758090
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  33757812 actaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatggtttgagttgaaaattataatttggt 33757911  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33757912 tttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctat 33758011  T
Q  201 ggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactc 279  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33758012 tgaatgaagatcaccacaagaaaggattctttatatgatcaatacaaggtccaatctagaacctaaagagcaattactc 33758090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 13179729 - 13180013
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttg-agttgaaaa-tgagaatttg 98  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  13179729 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttggagttgaaaaatgagaatttg 13179828  T
Q  99 gtttt--gaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagt 196  Q
    |||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13179829 gttttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagt 13179928  T
Q  197 ctatggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13179929 ctatggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 13180013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 13184387 - 13184671
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttg-agttgaaaa-tgagaatttg 98  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  13184387 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttggagttgaaaaatgagaatttg 13184486  T
Q  99 gtttt--gaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagt 196  Q
    |||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13184487 gttttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagt 13184586  T
Q  197 ctatggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13184587 ctatggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaattactcac 13184671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 16019451 - 16019571
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatggaat-gaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatcc 257  Q
    |||||| | |||||||||||||| ||||| |||||||||| ||| || || |||||||||||||||||||||||||||||||||| |   |||| |||||    
T  16019451 agggacactacactttctaatccaagaaagtgataagtctctgggattgaggatcaccacaagaaaggattcttgatatgatcaa-aattggtcaaatcc 16019549  T
Q  258 agaacctaaagagcaattactca 280  Q
    |||||| ||||||||||| ||||    
T  16019550 agaacc-aaagagcaattgctca 16019571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 5553646 - 5553584
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatg 201  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||    
T  5553646 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatg 5553584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 22271285 - 22271244
Alignment:
Q  162 gacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  22271285 gacgccacactttctaatcccagaaagtgataagtctatgga 22271244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 44794979 - 44794703
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaa--tgagaatttg 98  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  44794979 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaaaatgagaatttg 44794880  T
Q  99 gttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 198  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44794879 gttttgaattggtgtttaggctgatctatggtttcaaacaagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtct 44794780  T
Q  199 atggaatgaagatcaccacaagaaaggattcttgatatgatcaatacaaggtccaatccagaacctaaagagcaatt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44794779 atggaatgaagatcaccacaagaaaggattcttgatatgatcaatactaggtccaatccagaacctaaagagcaatt 44794703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 21465111 - 21465252
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21465111 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaatgagaatttgat 21465210  T
Q  101 tttgaattggtgtttaggctgatttgtggtttcaaacaagaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21465211 tttgaattggtgtttaggctgatttgtggtttcaaacaagaa 21465252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44794596 - 44794716
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttg---aaaatgagaattt 97  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  44794596 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaaaaaaatgagaattt 44794695  T
Q  98 ggttttgaattggtgtttagg 118  Q
    |||||||||||| | ||||||    
T  44794696 ggttttgaattgctctttagg 44794716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 6050200 - 6050264
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  6050200 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 6050264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 15409973 - 15409909
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  15409973 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 15409909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 127259 - 127083
Alignment:
Q  1 actaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatgattt-gagttg-aaaatgagaatttg 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  127259 actaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatgatttggagttgaaaaatgagaatttg 127160  T
Q  99 g--ttttgaattggtgtttaggctgatttgtggtttcaaacaagaaatggaatggagagtttagggacgccacactt 173  Q
    |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  127159 gttttttgaattggtgtttaggctgatctgtggtttcaaacaagaaatggaatggagagtttagggacgccacactt 127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 54945 - 54881
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| | | |||||||||||||||||||||||| ||||| |||||||||||||||    
T  54945 aagaaatggaatggata-tatagggacgccacactttctaatccaagaaagtgataagtctatgga 54881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 850 - 914
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  850 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 6789 - 6725
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  6789 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 6725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 22592 - 22656
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||||||||||    
T  22592 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtctatgga 22656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 33371 - 33327
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  33371 agggacgccacactttctaatccaagaaattgataagtctatgga 33327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 136911 - 136867
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  136911 agggacgccacactttctaatccaagaaagtgataagtctatgga 136867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 25738 - 25802
Alignment:
Q  138 aagaaatggaatggagagtttagggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||||||||||||| ||   ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  25738 aagaaatggaatggatagac-agggacgccacactttctaatccaagaaagtgataagtatatgga 25802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 4591 - 4635
Alignment:
Q  159 agggacgccacactttctaatcctagaaaatgataagtctatgga 203  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  4591 agggatgccacactttctaatccaagaaagtgataagtctatgga 4635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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