View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11128_high_7 (Length: 261)
Name: NF11128_high_7
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11128_high_7 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 25801793 - 25802015
Alignment:
| Q |
18 |
cgatattggttgcacttttggctccacaagctaggctacacttaaacagacatgagtcgtactcaacaagccaagacaaaaacaaaacttcctcataata |
117 |
Q |
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| T |
25801793 |
cgatattggttgcacttttggctccacaagctaggctacacttaaacaaacatgagtcgtactcaacaagccaagacaaaaacaaaacttcctcataata |
25801892 |
T |
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| Q |
118 |
caactttctacactttcaaattacctaattacccacaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattac |
217 |
Q |
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| T |
25801893 |
caactttctacactttcaaattacctaattaccctcaaaccagcacaagtccaaatcatgccccttccaattataaatacataacaacagttaccattac |
25801992 |
T |
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| Q |
218 |
atatgcaatatcacacaaacaaa |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
25801993 |
atatgcaatatcacacaaacaaa |
25802015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 112726 - 112502
Alignment:
| Q |
18 |
cgatattggttgcacttttggctccacaagctaggctacacttaaacagacatgagtcgtactcaacaagccaagacaaaaacaaaacttcctcataata |
117 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| ||||| || |||||| |||||||||||| ||||||||||| |||||||||||||||| |
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| T |
112726 |
cgatattggttgcacttttggctccacaagctatgttacact-aaacaaacttgagtcatactcaacaagcgaagacaaaaactaaacttcctcataata |
112628 |
T |
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| Q |
118 |
caactttctacactttcaaattacctaattacccacaaaccagcacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattac |
217 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112627 |
caactttctacactttcaaattacttaattaccctcaaaccaacacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattac |
112528 |
T |
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| Q |
218 |
atatgcaatatcacacaaacaaacag |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
112527 |
atatgcaatatcacacaaacaaacag |
112502 |
T |
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