View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11128_low_3 (Length: 409)
Name: NF11128_low_3
Description: NF11128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11128_low_3 |
 | |
|
| [»] scaffold0370 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 103 - 399
Target Start/End: Complemental strand, 40767004 - 40766708
Alignment:
| Q |
103 |
aataccattattcttcacttatagacaaagtccagcagctggttgaagaaaaagatgtaacatcccttgatgagatttcttgttcagaggtatgtagttg |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
40767004 |
aataccagtattcttcacttatagacaaagtccagcagctggttgaagaaaaagatgtagcatcccttgatgagatttcttgttcagaggtctgttgttg |
40766905 |
T |
|
| Q |
203 |
gtttaagtccctatatgttatttactttacacctgagaacttaaataaaacatcttctcattggagtatgcttctgttttgataaggagtttatttgtgt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40766904 |
gtttaagtccctatatgttatttactttacacctgagaactgaaataaaacatctgctcattggagtatgcttctgttttgataaggagtttatttgtgt |
40766805 |
T |
|
| Q |
303 |
tgcttgctttgatgtgcaaggttgggaagattatgttagaatggaacaataataaggctttttgaaaagattatgagaagaatgttgtgcattcatc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40766804 |
tgcttgctttgatgtgcaaggttgggaagattatgttagaatggaacaataataaggctttttgaaaagattatgagaagaatgttgtgcattcatc |
40766708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 40767290 - 40767205
Alignment:
| Q |
16 |
attgataacttctgagaatgtctaaccaaagataaagatgagaacttatagtaattttaaagatgtagttaaagacaaggttatga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767290 |
attgataacttctgagaatgtctaaccaaagataaagatgagaacttatagtaattttaaagatgtagttaaagacaaggttatga |
40767205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 370
Target Start/End: Complemental strand, 40759711 - 40759601
Alignment:
| Q |
260 |
tcattggagtatgcttctgttttgataaggagtttatttgtgttgcttgctttgatgtgcaaggttgggaagattatgttagaatggaacaataataagg |
359 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||| ||||||||||| |||||| ||||||||||| || |||||||||| ||||||||| || |
|
|
| T |
40759711 |
tcattggagtatgcttctgtttgaataagaagcttattttggttgcttgcttggatgtgttaggttgggaagtttgtgttagaatgatacaataataggg |
40759612 |
T |
|
| Q |
360 |
ctttttgaaaa |
370 |
Q |
| |
|
|||||||||| |
|
|
| T |
40759611 |
atttttgaaaa |
40759601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 38634363 - 38634473
Alignment:
| Q |
116 |
ttcacttatagacaaagtccagcagctggttgaagaaaaagatgtaacatcccttgatgagatttcttgttcagaggtatgtagttggtttaagtcccta |
215 |
Q |
| |
|
|||||||||| | |||||||| ||||||| ||||||||||||||| || |||| |||||||| || ||||||||| |||||||||||| || ||| |
|
|
| T |
38634363 |
ttcacttataaataaagtccatcagctggcagaagaaaaagatgtatcaaccctagatgagatgtcaaattcagaggttggtagttggtttagttcgcta |
38634462 |
T |
|
| Q |
216 |
tatgttattta |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
38634463 |
tatgttattta |
38634473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 38634690 - 38634751
Alignment:
| Q |
320 |
aaggttgggaagattatgttagaatggaacaataataaggctttttgaaaagattatgagaa |
381 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| |||||| |||| || ||||||||||||| |
|
|
| T |
38634690 |
aaggttggaaagtttatgttagaatggaacaacaataagactttccgagaagattatgagaa |
38634751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 38638828 - 38638879
Alignment:
| Q |
333 |
ttatgttagaatggaacaataataaggctttttgaaaagattatgagaagaa |
384 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
38638828 |
ttatgttaaaatggaataataataaggctttcagagaagattatgagaagaa |
38638879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 26374310 - 26374384
Alignment:
| Q |
16 |
attgataacttctgagaatgtctaaccaaagataaagatgagaacttatagtaattttaaagatgtagttaaaga |
90 |
Q |
| |
|
||||| ||||||||| ||||||| | |||||||||||||| ||||| | | ||||| ||||||| ||||||||| |
|
|
| T |
26374310 |
attgagaacttctgaaaatgtctcgctaaagataaagatgacaacttctgggaatttaaaagatgaagttaaaga |
26374384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 13567 - 13649
Alignment:
| Q |
111 |
tattcttcacttatagacaaagtccagcagctggttgaagaaaaagatgtaacatcccttgatgagatttcttgttcagaggt |
193 |
Q |
| |
|
|||| |||||||||| | ||||| || || ||| ||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
13567 |
tattgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacactccttgatgagatgtcaagttcagaggt |
13649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University